当前解析结果
SmilChr01G003219| 统一新 Gene ID | SmilChr01G003219 |
|---|---|
| 名称 | SmilChr01G003219 |
| 描述 | protein NRT1/ PTR FAMILY 5.1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 50966065 - 50970897 / + |
| NCBI Gene ID | LOC131009566 |
|---|---|
| GeneID | 131009566 |
| locus_tag | - |
| NCBI Name | LOC131009566 |
| 原始查询 | LOC131009566 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NRT1/ PTR FAMILY 5.1-like |
| 产物 | protein NRT1/ PTR FAMILY 5.1-like |
| Arabidopsis | AT2G40460 (AT2G40460)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818640] identity=27.6; qcov=0.641; evalue=3.55e-08; confidence=low |
| Rice | Os01g0871600 (OsPOT)- identity=24.6; qcov=0.952; evalue=1.53e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009566 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057792964.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057792964.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057792964.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057792964.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057792964.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:50966194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C79 |
Chr1:50966217 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B28,C79 |
Chr1:50966217 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B28,C79 |
Chr1:50966235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C79 |
Chr1:50970102 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | A2,B13,B135,D2 |
Chr1:50970102 |
G |
GA |
1bp_insertion | CDS_variant | 4 | A2,B13,B135,D2 |
Chr1:50970187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C42,C63 |
Chr1:50970585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B109,B5,B85,C6,C8 |
Chr1:50970689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr1:50970767 |
GGT |
G |
2bp_deletion | frameshift_variant | 10 | B119,B12,B132,B17,B85,C17,C33,C6,C8,D8 |
Chr1:50970770 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B25,B84,B98 |
Chr1:50970770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,B84,B98 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。