当前解析结果
SmilChr02G005603| 统一新 Gene ID | SmilChr02G005603 |
|---|---|
| 名称 | SmilChr02G005603 |
| 描述 | uncharacterized SmilChr02G005603 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75736353 - 75739430 / + |
| NCBI Gene ID | LOC131009570 |
|---|---|
| GeneID | 131009570 |
| locus_tag | - |
| NCBI Name | LOC131009570 |
| 原始查询 | LOC131009570 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819980]; symbol=AT3G07890; hit=AT3G07890; species=arabidopsis; confidence=high |
| 产物 | Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819980]; symbol=AT3G07890; hit=AT3G07890; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G07890 (AT3G07890)Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819980] identity=81.9; qcov=0.995; evalue=0; confidence=high |
| Rice | Os08g0337700- identity=73.2; qcov=0.935; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00566 (RabGAP-TBC); PF23436 (RabGap-TBC_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009570 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057792969.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057792969.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057792969.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792969.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792969.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75737244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:75738467 |
C |
CA |
1bp_insertion | frameshift_variant | 5 | A5,B73,B80,B82,D11 |
Chr2:75738467 |
C |
CA |
1bp_insertion | CDS_variant | 5 | A5,B73,B80,B82,D11 |
Chr2:75738471 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | A5,B73,B80,B82,D11 |
Chr2:75738471 |
GA |
G |
1bp_deletion | CDS_variant | 5 | A5,B73,B80,B82,D11 |
Chr2:75738476 |
CG |
C |
1bp_deletion | frameshift_variant | 10 | A5,B44,B73,B80,B82,C27,C56,C81,C9,D11 |
Chr2:75738487 |
G |
GGC |
2bp_insertion | frameshift_variant | 9 | B44,B73,B80,B82,C27,C56,C81,C9,D11 |
Chr2:75738503 |
TAA |
T |
2bp_deletion | frameshift_variant | 13 | A5,B16,B44,B73,B80,B82,C27,C56,C63,C67,C81,C9,D11 |
Chr2:75738655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:75738840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B132,B33,C75,C9 |
Chr2:75739015 |
T |
TA |
1bp_insertion | frameshift_variant | 13 | B135,B3,B34,B46,B50,B55,B73,C10,C45,C51,C58,C67,C81 |
Chr2:75739046 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 15 | A15,B100,B111,B126,B2,B25,B86,B88,B93,B96,C15,C60,C70,C77,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792969.1PF00566
RabGAP-TBC 120-327 aa
PF23436
RabGap-TBC_2 184-341 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792969.1 |
Pfam | PF00566 |
RabGAP-TBC | Family | 120 | 327 | 2.2e-58 | 198.2 | Rab-GTPase-TBC domain |
XP_057792969.1 |
Pfam | PF23436 |
RabGap-TBC_2 | Domain | 184 | 341 | 8.2e-32 | 111.3 | RabGAP TBC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。