当前解析结果
SmilChr02G002569| 统一新 Gene ID | SmilChr02G002569 |
|---|---|
| 名称 | SmilChr02G002569 |
| 描述 | uncharacterized SmilChr02G002569 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 44692150 - 44700080 / - |
| NCBI Gene ID | LOC131009578 |
|---|---|
| GeneID | 131009578 |
| locus_tag | - |
| NCBI Name | LOC131009578 |
| 原始查询 | LOC131009578 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=weak |
| 产物 | hit=Os06g0484800; species=rice; confidence=weak |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=28.7; qcov=0.282; evalue=1.78e-16; confidence=weak |
| Rice | Os06g0484800- identity=23.9; qcov=0.59; evalue=5.59e-21; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009578 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057792976.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057792976.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057792976.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792976.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792976.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:44693461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B41,B61,C51 |
Chr2:44693510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B98 |
Chr2:44693539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,A2 |
Chr2:44696626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B70,C57,C58 |
Chr2:44696631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,A25,B113,B50,C18 |
Chr2:44696888 |
AAC |
A |
2bp_deletion | frameshift_variant | 1 | B40 |
Chr2:44696888 |
AAC |
A |
2bp_deletion | CDS_variant | 1 | B40 |
Chr2:44696896 |
C |
CAA |
2bp_insertion | frameshift_variant | 1 | B40 |
Chr2:44696896 |
C |
CAA |
2bp_insertion | CDS_variant | 1 | B40 |
Chr2:44697323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B74,C16 |
Chr2:44697465 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C87 |
Chr2:44697465 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C87 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。