当前解析结果
SmilChr01G003223| 统一新 Gene ID | SmilChr01G003223 |
|---|---|
| 名称 | SmilChr01G003223 |
| 描述 | uncharacterized SmilChr01G003223 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 50997542 - 51002729 / + |
| NCBI Gene ID | LOC131009580 |
|---|---|
| GeneID | 131009580 |
| locus_tag | - |
| NCBI Name | LOC131009580 |
| 原始查询 | LOC131009580 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=27.1; qcov=0.262; evalue=1.22e-42; confidence=weak |
| Rice | Os06g0484800- identity=29.8; qcov=0.508; evalue=7.75e-106; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009580 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057792980.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057792980.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057792980.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792980.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792980.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:50997547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr1:50997559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B25,B38,B9,C13,C84 |
Chr1:50997642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,B78 |
Chr1:50997671 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B118,C5 |
Chr1:50997671 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B118,C5 |
Chr1:50997747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr1:50997792 |
G |
A |
EMS_canonical_SNV | stop_gained | 23 | A3,B115,B118,B42,B51,B52,B59,B61,B69,B77,B80,B81,B98,C16,C19,C22,C3,C4,C56,C75,C80,C86,D1 |
Chr1:50997793 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C70 |
Chr1:50997793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr1:50997866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B90,B92 |
Chr1:50997931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,D1 |
Chr1:50997983 |
T |
TA |
1bp_insertion | stop_gained,frameshift_variant | 3 | B126,B87,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792980.1PF00078
RVT_1 489-750 aa
PF13966
zf-RVT 1010-1086 aa
PF13456
RVT_3 1216-1335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792980.1 |
Pfam | PF00078 |
RVT_1 | Domain | 489 | 750 | 3.5e-30 | 106.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057792980.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1010 | 1086 | 6.5e-16 | 59.5 | zinc-binding in reverse transcriptase |
XP_057792980.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1216 | 1335 | 1.5e-16 | 61.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。