Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002631`

染色体: Chr02 坐标: 45686958-45689023 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002631`
名称	SmilChr02G002631
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	45686958 - 45689023 / `-`

ID 对照

NCBI Gene ID	`LOC131009603`
GeneID	`131009603`
locus_tag	`-`
NCBI Name	`LOC131009603`
原始查询	`LOC131009603`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=30.7; qcov=0.878; evalue=2.65e-88; confidence=low
Rice	`Os12g0225300` - identity=28.6; qcov=0.954; evalue=2.11e-74; confidence=low
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131009603

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793001.1`
2	Chromosome	染色体	0.00000	`XP_057793001.1`
3	Centromere	着丝粒	0.00000	`XP_057793001.1`
4	Chromatin	染色质	0.00000	`XP_057793001.1`
5	Telomere	端粒	0.00000	`XP_057793001.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:45686968`	`A`	`AG`	1bp_insertion	frameshift_variant	41	A11,A13,A19,A23,A3,A4,A5,B109,B111,B121,B129,B134,B137,B16,B17,B18,B19,B26,B36,B61,B83,B88,B90,B92,B94,C13,C14,C22,C25,C28,C32,C39,C55,C68,C74,C77,C82,C87,D10,D11,D3
`Chr2:45686987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B88,C2,C25,C28
`Chr2:45687114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,B14,B59,B73,C20
`Chr2:45687181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr2:45687314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B74
`Chr2:45687318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B74
`Chr2:45687365`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B21
`Chr2:45687365`	`C`	`CA`	1bp_insertion	CDS_variant	1	B21
`Chr2:45687370`	`AAT`	`A`	2bp_deletion	frameshift_variant	1	B74
`Chr2:45687370`	`AAT`	`A`	2bp_deletion	CDS_variant	1	B74
`Chr2:45687416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B48,B68,B99,C87
`Chr2:45687441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B88,B94,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793001.1

656 aa

328

656

FAR1

MULE

PF03101 FAR1 24-118 aa PF10551 MULE 240-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793001.1`	Pfam	`PF03101`	FAR1	Domain	24	118	2.2e-20	73.8	FAR1 DNA-binding domain
`XP_057793001.1`	Pfam	`PF10551`	MULE	Domain	240	332	1.3e-24	87.1	MULE transposase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937018.1
ATGCCAATTTGTGATGATAATGAGAAGCCATATGTCGGTAAGACATTCAAATCCATTGAGGAGCCGTGGAAATTTTATAAAGATTACGGCTATGCTTCTGGTTTCGATGTTCGGAAAGGATCCAGCAAAAAAGGGAAATCCGGTCAGATTATTTATCGCCACTTTGTGTGCATAAGGGAAGGCATTCATCATGGGGTAAATGATGAGTCATCAGGAATGCAATCAAAGACCAAAAAGAGACGTCGAAAGCCATCTTCCAG...

CDS

1 records

下载 CDS FASTA

LOC131009603
ATGCCAATTTGTGATGATAATGAGAAGCCATATGTCGGTAAGACATTCAAATCCATTGAGGAGCCGTGGAAATTTTATAAAGATTACGGCTATGCTTCTGGTTTCGATGTTCGGAAAGGATCCAGCAAAAAAGGGAAATCCGGTCAGATTATTTATCGCCACTTTGTGTGCATAAGGGAAGGCATTCATCATGGGGTAAATGATGAGTCATCAGGAATGCAATCAAAGACCAAAAAGAGACGTCGAAAGCCATCTTCCAG...

Protein

1 records

下载 Protein FASTA

XP_057793001.1
MPICDDNEKPYVGKTFKSIEEPWKFYKDYGYASGFDVRKGSSKKGKSGQIIYRHFVCIREGIHHGVNDESSGMQSKTKKRRRKPSSRNGCKARMIVTVHNESEYIVSSFTKAHNHKLISLECRHLMKYNRNVDASHQMIMLKCAKANIGPMRAFRVFKELVGSYEDIGCTSNYFKNLSYQMNSYPDGSDAQLLLDRLITKRDLEDGFRCEYLLDDCQKVKSIFWSDGIGLQNFSIFGEGVSFDATYTMNKYNMIFAPFTR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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