当前解析结果
SmilChr02G002679| 统一新 Gene ID | SmilChr02G002679 |
|---|---|
| 名称 | SmilChr02G002679 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46381363 - 46381773 / + |
| NCBI Gene ID | LOC131009617 |
|---|---|
| GeneID | 131009617 |
| locus_tag | - |
| NCBI Name | LOC131009617 |
| 原始查询 | LOC131009617 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | ATMG00810- identity=35.6; qcov=0.662; evalue=1.14e-12; confidence=low |
| Rice | Os11g0656500- identity=41; qcov=0.735; evalue=7.47e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009617 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057793014.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057793014.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793014.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793014.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793014.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46381366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B26 |
Chr2:46381402 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B105,B48,B69,B96,C18,C38,C71,C86 |
Chr2:46381407 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:46381434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B21,B22,B45,B95 |
Chr2:46381442 |
A |
AAG |
2bp_insertion | frameshift_variant | 2 | B21,B95 |
Chr2:46381442 |
A |
AAG |
2bp_insertion | CDS_variant | 2 | B21,B95 |
Chr2:46381447 |
ATG |
A |
2bp_deletion | frameshift_variant | 4 | B118,B21,B22,B95 |
Chr2:46381447 |
ATG |
A |
2bp_deletion | CDS_variant | 4 | B118,B21,B22,B95 |
Chr2:46381465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B22,B95 |
Chr2:46381473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,B22,B95 |
Chr2:46381570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B73,C86 |
Chr2:46381571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,C13,C59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。