Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002748`

染色体: Chr02 坐标: 47502410-47506439 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002748`
名称	SmilChr02G002748
描述	probable indole-3-pyruvate monooxygenase YUCCA11
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	47502410 - 47506439 / `-`

ID 对照

NCBI Gene ID	`LOC131009630`
GeneID	`131009630`
locus_tag	`-`
NCBI Name	`LOC131009630`
原始查询	`LOC131009630`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable indole-3-pyruvate monooxygenase YUCCA11
产物	probable indole-3-pyruvate monooxygenase YUCCA11
Arabidopsis	`AT1G21430` (YUC11) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838741] identity=56.5; qcov=0.984; evalue=3.92e-160; confidence=high
Rice	`Os11g0207700` (OsYUCCA13) - identity=56; qcov=0.984; evalue=9.05e-152; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00070 (Pyr_redox); PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131009630

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057793027.1`
2	Peroxisome	过氧化物酶体	0.20000	`XP_057793027.1`
3	Lipid droplet	脂滴	0.20000	`XP_057793027.1`
4	Nucleus	细胞核	0.00000	`XP_057793027.1`
5	Chromosome	染色体	0.00000	`XP_057793027.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:47502485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B104,C43,C5
`Chr2:47502494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:47502517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A20,B79,C43
`Chr2:47505208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B45,B64,B96,C45
`Chr2:47506006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B5
`Chr2:47506235`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B76
`Chr2:47506235`	`GC`	`G`	1bp_deletion	CDS_variant	1	B76
`Chr2:47506300`	`GCT`	`G`	2bp_deletion	frameshift_variant	1	A21
`Chr2:47506300`	`GCT`	`G`	2bp_deletion	CDS_variant	1	A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793027.1

383 aa

192

383

FMO-like

Pyr_redox_2

Pyr_redox_3

Lys_Orn_oxgnase

Pyr_redox

PF00743 FMO-like 5-314 aa PF07992 Pyr_redox_2 6-203 aa PF13738 Pyr_redox_3 8-203 aa PF13434 Lys_Orn_oxgnase 105-198 aa PF00070 Pyr_redox 173-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793027.1`	Pfam	`PF00743`	FMO-like	Family	5	314	1.6e-25	90.3	Flavin-binding monooxygenase-like
`XP_057793027.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	6	203	5.5e-16	59.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057793027.1`	Pfam	`PF13738`	Pyr_redox_3	Family	8	203	4e-23	82.9	Pyridine nucleotide-disulphide oxidoreductase
`XP_057793027.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	105	198	2.9e-11	43.8	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
`XP_057793027.1`	Pfam	`PF00070`	Pyr_redox	Domain	173	203	6.4e-07	30.5	Pyridine nucleotide-disulphide oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937044.1
ATGGAGCAGAAAAGCAGAGTGGTGATCGTGGGCGCAGGCCCCGCAGGCTTAGCAACCTCGGCATGCCTAAACCTCCAAAACATAGCCAACATTGTGCTGGAGCGAGAAGACTGCGCCGCCTCGCTGTGGCGGAAGAGAGCCTACGAGCGGCTGAAGCTCCACCTGGCCAAGGAGTTCTGCCAGCTCCCCCACATGCCCTTCCCGCCCAATTCCCCGACCTTCATCCCCAGAAACGCCTTCATCCGCTACCTCGACGACTA...

CDS

1 records

下载 CDS FASTA

LOC131009630
ATGGAGCAGAAAAGCAGAGTGGTGATCGTGGGCGCAGGCCCCGCAGGCTTAGCAACCTCGGCATGCCTAAACCTCCAAAACATAGCCAACATTGTGCTGGAGCGAGAAGACTGCGCCGCCTCGCTGTGGCGGAAGAGAGCCTACGAGCGGCTGAAGCTCCACCTGGCCAAGGAGTTCTGCCAGCTCCCCCACATGCCCTTCCCGCCCAATTCCCCGACCTTCATCCCCAGAAACGCCTTCATCCGCTACCTCGACGACTA...

Protein

1 records

下载 Protein FASTA

XP_057793027.1
MEQKSRVVIVGAGPAGLATSACLNLQNIANIVLEREDCAASLWRKRAYERLKLHLAKEFCQLPHMPFPPNSPTFIPRNAFIRYLDDYVARFGVSPLCCRSVVSASLQSGKWVVVARNGRSGATERYVAEFLVVATGENSEGFIPPLQGLHSFKGEVLHSSMYENGERFEEREVLVVGSGNSGMEIALDLANWGARTSVVIRSPVHVLSENLVRLGMTLLSYLPLNLVDNLVVFLGNMKHGNLSKYGIRRPKEGPFFLKMA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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