Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003298`

染色体: Chr01 坐标: 51666753-51674549 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003298`
名称	SmilChr01G003298
描述	uncharacterized SmilChr01G003298
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51666753 - 51674549 / `+`

ID 对照

NCBI Gene ID	`LOC131009694`
GeneID	`131009694`
locus_tag	`-`
NCBI Name	`LOC131009694`
原始查询	`LOC131009694`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	YR1; symbol=YR1; hit=Os05g0492200; species=rice; confidence=low
产物	YR1; symbol=YR1; hit=Os05g0492200; species=rice; confidence=low
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.9; qcov=0.477; evalue=2.06e-103; confidence=low
Rice	`Os05g0492200` (YR1) - identity=30.9; qcov=0.482; evalue=3.02e-110; confidence=low
GO	GO:0005515 (protein binding); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00560 (LRR_1); PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:131009694

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057793091.1`
2	Cytosol	细胞质基质	0.20000	`XP_057793091.1`
3	Nucleus	细胞核	0.00000	`XP_057793091.1`
4	Chromosome	染色体	0.00000	`XP_057793091.1`
5	Centromere	着丝粒	0.00000	`XP_057793091.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51666889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B68,C26
`Chr1:51666897`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	C59
`Chr1:51666897`	`TGA`	`T`	2bp_deletion	CDS_variant	1	C59
`Chr1:51666904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr1:51666930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr1:51666998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C22,C35
`Chr1:51667000`	`C`	`CA`	1bp_insertion	frameshift_variant	17	A11,A19,A25,B10,B102,B110,B134,B137,B19,B21,B29,B4,B61,B67,B87,C30,C70
`Chr1:51667008`	`G`	`A`	EMS_canonical_SNV	stop_gained	11	A23,A5,B1,B117,B17,C10,C2,C61,C65,C79,D8
`Chr1:51667015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C64,C66,C82
`Chr1:51667018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B127,B93,C57
`Chr1:51667019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B127,B93,C57
`Chr1:51667039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B128

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793091.1

2087 aa

1044

2087

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

LRR_R13L1-DRL21

PF18052 Rx_N 5-93 aa PF00931 NB-ARC 169-339 aa PF23559 WHD_DRP 426-500 aa PF23598 LRR_14 547-654 aa PF23598 LRR_14 662-966 aa PF25019 LRR_R13L1-DRL21 760-891 aa PF18052 Rx_N 1065-1156 aa PF00931 NB-ARC 1233-1402 aa PF23559 WHD_DRP 1491-1567 aa PF23598 LRR_14 1729-2006 aa PF00560 LRR_1 1735-1757 aa PF25019 LRR_R13L1-DRL21 1828-1958 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793091.1`	Pfam	`PF18052`	Rx_N	Domain	5	93	1.2e-47	160.7	Rx N-terminal domain
`XP_057793091.1`	Pfam	`PF00931`	NB-ARC	Domain	169	339	9.9e-72	240.8	NB-ARC domain
`XP_057793091.1`	Pfam	`PF23559`	WHD_DRP	Domain	426	500	6.8e-35	119.6	Disease resistance protein Winged helix domain
`XP_057793091.1`	Pfam	`PF23598`	LRR_14	Repeat	547	654	4.8e-73	246.6	Leucine-rich repeat region
`XP_057793091.1`	Pfam	`PF23598`	LRR_14	Repeat	662	966	4.8e-73	246.6	Leucine-rich repeat region
`XP_057793091.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	760	891	1e-52	178.1	R13L1/DRL21 LRRs
`XP_057793091.1`	Pfam	`PF18052`	Rx_N	Domain	1065	1156	1.2e-47	160.7	Rx N-terminal domain
`XP_057793091.1`	Pfam	`PF00931`	NB-ARC	Domain	1233	1402	9.9e-72	240.8	NB-ARC domain
`XP_057793091.1`	Pfam	`PF23559`	WHD_DRP	Domain	1491	1567	6.8e-35	119.6	Disease resistance protein Winged helix domain
`XP_057793091.1`	Pfam	`PF23598`	LRR_14	Repeat	1729	2006	4.8e-73	246.6	Leucine-rich repeat region
`XP_057793091.1`	Pfam	`PF00560`	LRR_1	Repeat	1735	1757	2.7e-10	39.0	Leucine Rich Repeat
`XP_057793091.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1828	1958	1e-52	178.1	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937108.1
AATGTCGAGCACGCACAAATCAAGAGAAGAAAATATAAACATAGAGAGTGAGAAAAGTGCAAGCAGCAGTGACAATGGCGTATGCTGTTATTTCAGTCGTGGCGGAGAGAGTTGCAGCTTTCATTGAAGATCGCGTGAATTTGGTGAGAGGCGTCAAGAAACAGCTTCTCCATCTTTCCGACAAGCTCCATACCATCAGAGATGTGTTGGATGATGCAGAAAACAGAGGAGTCAAGGATCAAAGCGTCAAAAATTGGTTG...

CDS

1 records

下载 CDS FASTA

LOC131009694
ATGGCGTATGCTGTTATTTCAGTCGTGGCGGAGAGAGTTGCAGCTTTCATTGAAGATCGCGTGAATTTGGTGAGAGGCGTCAAGAAACAGCTTCTCCATCTTTCCGACAAGCTCCATACCATCAGAGATGTGTTGGATGATGCAGAAAACAGAGGAGTCAAGGATCAAAGCGTCAAAAATTGGTTGAAGAAGCTCGAAGATACGGCCTATGAGATGGACGACATTTTGGATGAATGGAACTACGCTCTTCTCAAACATAA...

Protein

1 records

下载 Protein FASTA

XP_057793091.1
MAYAVISVVAERVAAFIEDRVNLVRGVKKQLLHLSDKLHTIRDVLDDAENRGVKDQSVKNWLKKLEDTAYEMDDILDEWNYALLKHKMPKQKVNCSFIPSSWFCSNKVGVRHDTAIKIQIVKATLDQILKEKDDFNFVISLPAIVPVPKSWRDQSTSSIEFDKVYGRDEDRDNIVRQLMKLDGDAQLVCVVGMGGIGKTTLAQLVYNDTQIEDCFELKIWICVSEPFDMVAIARGIVDSVGIETIPPNTDQLDLVLQKLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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