Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003338`

染色体: Chr01 坐标: 52122220-52124536 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003338`
名称	SmilChr01G003338
描述	indole-3-glycerol phosphate synthase, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52122220 - 52124536 / `+`

ID 对照

NCBI Gene ID	`LOC131009761`
GeneID	`131009761`
locus_tag	`-`
NCBI Name	`LOC131009761`
原始查询	`LOC131009761`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	indole-3-glycerol phosphate synthase, chloroplastic-like
产物	indole-3-glycerol phosphate synthase%2C chloroplastic-like
Arabidopsis	`AT2G04400` (AT2G04400) Aldolase-type TIM barrel family protein [Source:NCBI gene (formerly Entrezgene);Acc:814980] identity=66.5; qcov=1.03; evalue=1.92e-100; confidence=high
Rice	`Os04g0467700` - identity=67.8; qcov=0.953; evalue=4.95e-97; confidence=high
GO	GO:0000162 (L-tryptophan biosynthetic process); GO:0004425 (indole-3-glycerol-phosphate synthase activity); GO:0004640 (phosphoribosylanthranilate isomerase activity)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00218 (IGPS)
InterPro	-
eggNOG	-
NR	GeneID:131009761

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793155.1`
2	Cytoplasm	细胞质	0.40000	`XP_057793155.1`
3	Nucleus	细胞核	0.00000	`XP_057793155.1`
4	Chromosome	染色体	0.00000	`XP_057793155.1`
5	Centromere	着丝粒	0.00000	`XP_057793155.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52122271`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr1:52122277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B25,B94
`Chr1:52122298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B77,B95
`Chr1:52122307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr1:52122705`	`T`	`TTA`	2bp_insertion	frameshift_variant	8	A2,A9,B101,B49,B83,C15,C31,C80
`Chr1:52122707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B16,C30
`Chr1:52122741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B53,C42
`Chr1:52122752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B107,B20,B37,B54
`Chr1:52122924`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A14
`Chr1:52122924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr1:52123063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr1:52123781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B137,B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793155.1

215 aa

108

215

IGPS

PF00218 IGPS 8-155 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793155.1`	Pfam	`PF00218`	IGPS	Domain	8	155	2.6e-47	161.9	Indole-3-glycerol phosphate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937172.1
ATGAAAGAGAAGAAGCCATACTTGGTGCTCAAGAAACTGCTGGATAAAGCGCCACCAGCTAGAGATTTTATTGGAGCTCTGAAAGAGGCGAACTCACGGACTGGGTTTCCCGACTTAATTGCTGAAGTGAAGAAGGCGTCTCCGAGCAGAGGAGTTCTGAGAGAGAATTTTGATCCTGTTGAGATCGCTAAAGCTTATGAAAAAGGTGGAGCTGCTTGCCTTAGTGTTTTAACCGACGAGAAGTATTTCCAAGGAAGCTT...

CDS

1 records

下载 CDS FASTA

LOC131009761
ATGAAAGAGAAGAAGCCATACTTGGTGCTCAAGAAACTGCTGGATAAAGCGCCACCAGCTAGAGATTTTATTGGAGCTCTGAAAGAGGCGAACTCACGGACTGGGTTTCCCGACTTAATTGCTGAAGTGAAGAAGGCGTCTCCGAGCAGAGGAGTTCTGAGAGAGAATTTTGATCCTGTTGAGATCGCTAAAGCTTATGAAAAAGGTGGAGCTGCTTGCCTTAGTGTTTTAACCGACGAGAAGTATTTCCAAGGAAGCTT...

Protein

1 records

下载 Protein FASTA

XP_057793155.1
MKEKKPYLVLKKLLDKAPPARDFIGALKEANSRTGFPDLIAEVKKASPSRGVLRENFDPVEIAKAYEKGGAACLSVLTDEKYFQGSFENLELIRNSGVQCPLLCKEFVIDAWQIYYARVKGADAILLIAAILPDLDIKYMTKICKLFGLTALVEVCSLFAPLETFELDIANTKKLLQGERGQKIREKGIMVVGESGLFTPADIPSIPLVNNFFGN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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