当前解析结果
SmilChr02G003435| 统一新 Gene ID | SmilChr02G003435 |
|---|---|
| 名称 | SmilChr02G003435 |
| 描述 | lysM domain receptor-like kinase 4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55587396 - 55589165 / + |
| NCBI Gene ID | LOC131009763 |
|---|---|
| GeneID | 131009763 |
| locus_tag | - |
| NCBI Name | LOC131009763 |
| 原始查询 | LOC131009763 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lysM domain receptor-like kinase 4 |
| 产物 | lysM domain receptor-like kinase 4 |
| Arabidopsis | AT2G23770 (LYK4)protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816909] identity=36.9; qcov=1.04; evalue=7.73e-114; confidence=medium |
| Rice | Os06g0625200 (OsLysM-RLK6)- identity=32.5; qcov=1.01; evalue=4.57e-78; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01476 (LysM); PF07714 (PK_Tyr_Ser-Thr); PF23446 (LysM1_NFP_LYK); PF23472 (LysM2_CERK1_LYK3_4_5); PF23473 (LysM3_LYK4_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009763 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793154.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793154.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793154.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793154.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793154.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55587461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B68,B71,C45 |
Chr2:55587636 |
C |
CA |
1bp_insertion | frameshift_variant | 12 | A10,A6,A8,B19,B23,B57,B75,B86,B99,C10,C28,C75 |
Chr2:55588035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C39,C65 |
Chr2:55588108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B69 |
Chr2:55588188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr2:55588337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B36,C36,D1 |
Chr2:55588354 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | C87,D2 |
Chr2:55588354 |
T |
TA |
1bp_insertion | CDS_variant | 2 | C87,D2 |
Chr2:55588355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C87,D2 |
Chr2:55588436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,B23,B37,D3 |
Chr2:55588582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793154.1PF23446
LysM1_NFP_LYK 35-91 aa
PF23472
LysM2_CERK1_LYK3_4_5 96-149 aa
PF01476
LysM 102-147 aa
PF23473
LysM3_LYK4_5 165-213 aa
PF01476
LysM 170-212 aa
PF00069
Pkinase 343-575 aa
PF07714
PK_Tyr_Ser-Thr 343-577 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793154.1 |
Pfam | PF23446 |
LysM1_NFP_LYK | Domain | 35 | 91 | 3.8e-22 | 79.6 | NFP/LYK LysM1 domain |
XP_057793154.1 |
Pfam | PF23472 |
LysM2_CERK1_LYK3_4_5 | Domain | 96 | 149 | 1.8e-20 | 73.3 | LYK3/4/5 LysM2 domain |
XP_057793154.1 |
Pfam | PF01476 |
LysM | Domain | 102 | 147 | 2.8e-12 | 47.1 | LysM domain |
XP_057793154.1 |
Pfam | PF23473 |
LysM3_LYK4_5 | Domain | 165 | 213 | 1.1e-13 | 51.8 | LYK4/5 LysM3 domain |
XP_057793154.1 |
Pfam | PF01476 |
LysM | Domain | 170 | 212 | 2.8e-12 | 47.1 | LysM domain |
XP_057793154.1 |
Pfam | PF00069 |
Pkinase | Domain | 343 | 575 | 1.3e-38 | 133.6 | Protein kinase domain |
XP_057793154.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 343 | 577 | 4.5e-38 | 131.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。