当前解析结果
SmilChr02G003496| 统一新 Gene ID | SmilChr02G003496 |
|---|---|
| 名称 | SmilChr02G003496 |
| 描述 | uncharacterized SmilChr02G003496 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 56185346 - 56199336 / - |
| NCBI Gene ID | LOC131009772 |
|---|---|
| GeneID | 131009772 |
| locus_tag | - |
| NCBI Name | LOC131009772 |
| 原始查询 | LOC131009772 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | flavodoxin family protein / radical SAM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843857]; symbol=AT1G75200; hit=AT1G75200; species=arabidopsis; confidence=low |
| 产物 | flavodoxin family protein / radical SAM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843857]; symbol=AT1G75200; hit=AT1G75200; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G75200 (AT1G75200)flavodoxin family protein / radical SAM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843857] identity=69.2; qcov=0.441; evalue=0; confidence=low |
| Rice | Os03g0775300- identity=72.8; qcov=0.333; evalue=0; confidence=low |
| GO | GO:0008168 (methyltransferase activity); GO:0010181 (FMN binding); GO:0031591 (wybutosine biosynthetic process); GO:0051539 (4 iron, 4 sulfur cluster binding) |
| KEGG | - |
| Pfam | PF00258 (Flavodoxin_1); PF03141 (Methyltransf_29); PF04055 (Radical_SAM); PF08241 (Methyltransf_11); PF08608 (Wyosine_form) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009772 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057793163.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057793163.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793163.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793163.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793163.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:56185817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,C57 |
Chr2:56185907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr2:56186164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C71 |
Chr2:56186221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr2:56186424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B87 |
Chr2:56187515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,A9 |
Chr2:56187548 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B16 |
Chr2:56187548 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B16 |
Chr2:56187809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:56187863 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C55 |
Chr2:56187863 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C55 |
Chr2:56189260 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793163.1PF03141
Methyltransf_29 223-712 aa
PF08241
Methyltransf_11 340-436 aa
PF00258
Flavodoxin_1 871-1012 aa
PF04055
Radical_SAM 1152-1324 aa
PF08608
Wyosine_form 1333-1396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793163.1 |
Pfam | PF03141 |
Methyltransf_29 | Family | 223 | 712 | 7.3e-182 | 606.2 | Putative S-adenosyl-L-methionine-dependent methyltransferase |
XP_057793163.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 340 | 436 | 9.1e-09 | 36.6 | Methyltransferase domain |
XP_057793163.1 |
Pfam | PF00258 |
Flavodoxin_1 | Domain | 871 | 1012 | 2.6e-21 | 77.0 | Flavodoxin |
XP_057793163.1 |
Pfam | PF04055 |
Radical_SAM | Domain | 1152 | 1324 | 1.2e-14 | 55.5 | Radical SAM superfamily |
XP_057793163.1 |
Pfam | PF08608 |
Wyosine_form | Family | 1333 | 1396 | 6.1e-24 | 84.8 | Wyosine base formation |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。