当前解析结果
SmilChr02G004091| 统一新 Gene ID | SmilChr02G004091 |
|---|---|
| 名称 | SmilChr02G004091 |
| 描述 | uncharacterized SmilChr02G004091 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 63178134 - 63178970 / - |
| NCBI Gene ID | LOC131009869 |
|---|---|
| GeneID | 131009869 |
| locus_tag | - |
| NCBI Name | LOC131009869 |
| 原始查询 | LOC131009869 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=35.6; qcov=0.536; evalue=3.22e-20; confidence=low |
| Rice | Os06g0521000- identity=32.5; qcov=0.608; evalue=2.34e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009869 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793255.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057793255.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057793255.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057793255.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057793255.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:63178136 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B96 |
Chr2:63178136 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B96 |
Chr2:63178144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B78 |
Chr2:63178154 |
G |
A |
EMS_canonical_SNV | stop_gained | 40 | A20,A6,A8,B101,B109,B110,B121,B131,B140,B18,B19,B25,B33,B47,B51,B52,B59,B60,B62,B63,B69,B73,B77,B83,B86,B99,C10,C22,C24,C3,C35,C36,C39,C41,C6,C75,C82,C84,D4,D8 |
Chr2:63178161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B47,B78,C33,C61 |
Chr2:63178171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B62,C6,C80 |
Chr2:63178179 |
C |
T |
EMS_canonical_SNV | stop_gained | 32 | A1,A10,A20,A4,A5,B118,B17,B22,B23,B24,B27,B34,B4,B55,B59,B65,B84,C14,C15,C23,C24,C28,C55,C56,C57,C83,C84,C85,C9,D11,D8,D9 |
Chr2:63178184 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A5,B101,B137,B140,B28,B35,B59,B62,B71,B77,B89,B94,B98,B99,C14,C3,C34,C35,C39,C40,C45,C47,C66,C71,C82 |
Chr2:63178193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B126,B34,B97,C73 |
Chr2:63178200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr2:63178220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr2:63178226 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A11,B105,C34,C65,C74,C76 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。