Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004101`

染色体: Chr02 坐标: 63335799-63337026 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004101`
名称	SmilChr02G004101
描述	uncharacterized SmilChr02G004101
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63335799 - 63337026 / `+`

ID 对照

NCBI Gene ID	`LOC131009870`
GeneID	`131009870`
locus_tag	`-`
NCBI Name	`LOC131009870`
原始查询	`LOC131009870`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=medium
产物	ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G29765` (AT3G29765) ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666] identity=43.1; qcov=0.974; evalue=1.19e-92; confidence=medium
Rice	`Os02g0301400` - identity=37.3; qcov=0.483; evalue=3.12e-26; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT)
InterPro	-
eggNOG	-
NR	GeneID:131009870

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793256.1`
2	Cytoplasm	细胞质	0.20000	`XP_057793256.1`
3	Chromosome	染色体	0.00000	`XP_057793256.1`
4	Centromere	着丝粒	0.00000	`XP_057793256.1`
5	Chromatin	染色质	0.00000	`XP_057793256.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63335959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr2:63335988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr2:63336165`	`AT`	`A`	1bp_deletion	frameshift_variant	4	B125,B17,B90,B92
`Chr2:63336165`	`AT`	`A`	1bp_deletion	CDS_variant	4	B125,B17,B90,B92
`Chr2:63336185`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B98
`Chr2:63336185`	`GA`	`G`	1bp_deletion	CDS_variant	1	B98
`Chr2:63336215`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A18
`Chr2:63336215`	`TG`	`T`	1bp_deletion	CDS_variant	1	A18
`Chr2:63336221`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B124,B129,B134,C43
`Chr2:63336221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B129,B134,C43
`Chr2:63336301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:63336303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C23,C29,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793256.1

350 aa

175

350

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 277-336 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793256.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	277	336	6.6e-07	29.8	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937273.1
AGAAAAGATCAGCTTAGAATGTTAGAACATGAGAGATTAGTCAAAGAACTCAATGATAAAGTAAGGACAAGTGGAAAAGGCCAAAATCAGGAGACAAGTTTGGTAAGACCTGGAGATACTCGATGGGGCTCACATTATGTGACTTTGCTTCGTTTATGTGCTATGTGGCCTTCAGTAGAGAAAGTGTTGGAGAATATACGTGATGATACCACTAGCTTTGAAGTTAGAAGTACTGCAAGAGGTTTGCTTCGGAAGATGAA...

CDS

1 records

下载 CDS FASTA

LOC131009870
ATGTTAGAACATGAGAGATTAGTCAAAGAACTCAATGATAAAGTAAGGACAAGTGGAAAAGGCCAAAATCAGGAGACAAGTTTGGTAAGACCTGGAGATACTCGATGGGGCTCACATTATGTGACTTTGCTTCGTTTATGTGCTATGTGGCCTTCAGTAGAGAAAGTGTTGGAGAATATACGTGATGATACCACTAGCTTTGAAGTTAGAAGTACTGCAAGAGGTTTGCTTCGGAAGATGAATGATTATGAGTTGGTGTT...

Protein

1 records

下载 Protein FASTA

XP_057793256.1
MLEHERLVKELNDKVRTSGKGQNQETSLVRPGDTRWGSHYVTLLRLCAMWPSVEKVLENIRDDTTSFEVRSTARGLLRKMNDYELVFVMHLMKYLLGITNELSYALQRRDQNIVQAMILIDAVKSQLHDFRNTGWEIICDEVNRFCEVNAISLIDMEDTITRPGYRRQSITNDHYYRVEIFTEVVDLIIQEMNNRFSEASTDLLRCMACLDPRDSFSQFDINQLMRFTTWYPEDFSAGDCLYLPQQLRNFIVLVRHHPRF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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