Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004123

染色体: Chr02 坐标: 63493849-63496261 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004123
名称SmilChr02G004123
描述uncharacterized SmilChr02G004123
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向63493849 - 63496261 / +

ID 对照

NCBI Gene IDLOC131009873
GeneID131009873
locus_tag-
NCBI NameLOC131009873
原始查询LOC131009873

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=high
产物exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=high
ArabidopsisAT5G25500 (AT5G25500)
exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]
identity=45.7; qcov=0.985; evalue=4.74e-110; confidence=high
RiceOs11g0207300
-
identity=34.3; qcov=1.04; evalue=1.4e-59; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131009873

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793260.1
2 Cytoplasm 细胞质 0.40000 XP_057793260.1
3 Chromosome 染色体 0.00000 XP_057793260.1
4 Centromere 着丝粒 0.00000 XP_057793260.1
5 Chromatin 染色质 0.00000 XP_057793260.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:63493883 CGA C 2bp_deletion frameshift_variant 9 B111,B13,B77,C27,C30,C5,C65,C75,C76
Chr2:63494007 C T EMS_canonical_SNV CDS_variant 1 C39
Chr2:63494092 TC T 1bp_deletion frameshift_variant 22 B10,B100,B107,B114,B26,B35,B59,B63,B64,B66,B8,B83,C10,C24,C31,C35,C56,C70,C73,C76,C83,D9
Chr2:63494363 G A EMS_canonical_SNV CDS_variant 1 B125
Chr2:63494376 G A EMS_canonical_SNV CDS_variant 2 B69,B84
Chr2:63494532 G A EMS_canonical_SNV CDS_variant 1 B86
Chr2:63494696 G A EMS_canonical_SNV CDS_variant 3 A11,B11,B131
Chr2:63494755 C T EMS_canonical_SNV CDS_variant 4 B107,B26,C24,C66
Chr2:63494832 C T EMS_canonical_SNV CDS_variant 1 C22
Chr2:63496251 G A EMS_canonical_SNV CDS_variant 5 A7,B121,B14,B140,C33

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937277.1
GCAAGAAGCAGCTTTATGCGATTGAATCATCATTCGAGAGAAGAAAAAGAAGGAATTGCCCCTCGAGAATGGTACGAAGCCGCTTTCTCCAAGATGAAGAAATGGAGCCAATCATTGAAAGATCTCGACCTGATCGGCGGGAGGCTCGTGAACATCAACGATCATTCAAGAATCTTCGATGAGAAGCTTGAGAAGAAAATGCACACTTTCAAGTCCATCGCTAGGGAGCTCATTTTGCTGCCATCTATGCAGGAGACTTT...

CDS

1 records

下载 CDS FASTA
LOC131009873
ATGCGATTGAATCATCATTCGAGAGAAGAAAAAGAAGGAATTGCCCCTCGAGAATGGTACGAAGCCGCTTTCTCCAAGATGAAGAAATGGAGCCAATCATTGAAAGATCTCGACCTGATCGGCGGGAGGCTCGTGAACATCAACGATCATTCAAGAATCTTCGATGAGAAGCTTGAGAAGAAAATGCACACTTTCAAGTCCATCGCTAGGGAGCTCATTTTGCTGCCATCTATGCAGGAGACTTTGAAGAACAACTTGAT...

Protein

1 records

下载 Protein FASTA
XP_057793260.1
MRLNHHSREEKEGIAPREWYEAAFSKMKKWSQSLKDLDLIGGRLVNINDHSRIFDEKLEKKMHTFKSIARELILLPSMQETLKNNLMDSLADQRYKELEYFCRPHERDVLTVSSLTKVADMLSISAQQRKVVRKNIGPQVTQHKIWTGALFQILNGLKSEVELLNQRGSSKEIRLSQQILAGCLKILESTMSYDVESSSWMRLPPTKGVDATHSPKWGDALEMCIDLVSCLSDESELTFHVSKLELMKEGLFQIRDILID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器