当前解析结果
SmilChr02G004123| 统一新 Gene ID | SmilChr02G004123 |
|---|---|
| 名称 | SmilChr02G004123 |
| 描述 | uncharacterized SmilChr02G004123 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 63493849 - 63496261 / + |
| NCBI Gene ID | LOC131009873 |
|---|---|
| GeneID | 131009873 |
| locus_tag | - |
| NCBI Name | LOC131009873 |
| 原始查询 | LOC131009873 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=high |
| 产物 | exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G25500 (AT5G25500)exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625] identity=45.7; qcov=0.985; evalue=4.74e-110; confidence=high |
| Rice | Os11g0207300- identity=34.3; qcov=1.04; evalue=1.4e-59; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009873 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793260.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057793260.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793260.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793260.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793260.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:63493883 |
CGA |
C |
2bp_deletion | frameshift_variant | 9 | B111,B13,B77,C27,C30,C5,C65,C75,C76 |
Chr2:63494007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:63494092 |
TC |
T |
1bp_deletion | frameshift_variant | 22 | B10,B100,B107,B114,B26,B35,B59,B63,B64,B66,B8,B83,C10,C24,C31,C35,C56,C70,C73,C76,C83,D9 |
Chr2:63494363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr2:63494376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B84 |
Chr2:63494532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr2:63494696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B11,B131 |
Chr2:63494755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B26,C24,C66 |
Chr2:63494832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:63496251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B121,B14,B140,C33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。