当前解析结果
SmilChr02G004166| 统一新 Gene ID | SmilChr02G004166 |
|---|---|
| 名称 | SmilChr02G004166 |
| 描述 | uncharacterized SmilChr02G004166 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 63971723 - 63973136 / - |
| NCBI Gene ID | LOC131009879 |
|---|---|
| GeneID | 131009879 |
| locus_tag | - |
| NCBI Name | LOC131009879 |
| 原始查询 | LOC131009879 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:840805]; symbol=AT1G41920; hit=AT1G41920; species=arabidopsis; confidence=medium |
| 产物 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:840805]; symbol=AT1G41920; hit=AT1G41920; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G41920 (AT1G41920)ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:840805] identity=39; qcov=0.521; evalue=3.16e-27; confidence=medium |
| Rice | Os09g0356100- identity=38.5; qcov=0.349; evalue=3.54e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009879 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793266.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057793266.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793266.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793266.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793266.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:63972295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:63972298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B123,B65 |
Chr2:63972329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr2:63972422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C83 |
Chr2:63972428 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | A2,A9,B122,B57,C48,C51 |
Chr2:63972437 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A13,A16,A19,A20,B115,B41,B51,B61,B85,B89,C15,C28,C30,C31,C64,C8,C83,C9,D6 |
Chr2:63972566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,D2 |
Chr2:63972568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B60,B94 |
Chr2:63972586 |
GT |
G |
1bp_deletion | frameshift_variant | 2 | B111,B42 |
Chr2:63972586 |
GT |
G |
1bp_deletion | CDS_variant | 2 | B111,B42 |
Chr2:63972596 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A13,B113,B30,B47,B5,B65,B74,B75,B83,B9,C17,C19,C32,C55,C7,C75,C79 |
Chr2:63972598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B115,B37,B54,C36 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。