当前解析结果
SmilChr02G004268| 统一新 Gene ID | SmilChr02G004268 |
|---|---|
| 名称 | SmilChr02G004268 |
| 描述 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 64887843 - 64905621 / + |
| NCBI Gene ID | LOC131009890 |
|---|---|
| GeneID | 131009890 |
| locus_tag | - |
| NCBI Name | LOC131009890 |
| 原始查询 | LOC131009890 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like |
| 产物 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like |
| Arabidopsis | AT3G14270 (FAB1B)phosphatidylinositol-4-phosphate 5-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820647] identity=58.2; qcov=0.991; evalue=0; confidence=high |
| Rice | Os08g0428900 (P0479C08.109)- identity=43.7; qcov=1.01; evalue=0; confidence=medium |
| GO | GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00118 (Cpn60_TCP1); PF01504 (PIP5K) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009890 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057793276.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057793276.1 |
| 3 | Endosome | 内体 | 0.20000 | XP_057793276.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793276.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793276.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:64887857 |
AG |
A |
1bp_deletion | frameshift_variant | 13 | B123,B137,B30,B51,B6,B66,B72,B87,C36,C37,C52,C54,C75 |
Chr2:64887864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr2:64887871 |
CG |
C |
1bp_deletion | frameshift_variant | 43 | A10,A2,A4,A9,B102,B106,B109,B110,B122,B124,B128,B16,B19,B20,B30,B34,B46,B5,B57,B75,B86,B88,B90,B92,B93,B94,B99,C1,C14,C2,C20,C21,C25,C28,C38,C44,C48,C50,C51,C54,C72,C73,C84 |
Chr2:64895021 |
T |
TA |
1bp_insertion | frameshift_variant | 28 | A1,A14,A20,B108,B110,B16,B20,B3,B31,B35,B63,B73,B79,B93,B98,C16,C24,C25,C29,C43,C6,C60,C62,C69,C7,C82,D10,D5 |
Chr2:64895047 |
CA |
C |
1bp_deletion | frameshift_variant | 3 | B61,C71,C76 |
Chr2:64895047 |
CA |
C |
1bp_deletion | CDS_variant | 3 | B61,C71,C76 |
Chr2:64895055 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B61,C71 |
Chr2:64895055 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B61,C71 |
Chr2:64895095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,B76 |
Chr2:64895207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C82,D10 |
Chr2:64896801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B45,B53,C48 |
Chr2:64898883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793276.1PF00118
Cpn60_TCP1 12-137 aa
PF01504
PIP5K 1031-1197 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793276.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 12 | 137 | 5.6e-14 | 52.4 | TCP-1/cpn60 chaperonin family |
XP_057793276.1 |
Pfam | PF01504 |
PIP5K | Family | 1031 | 1197 | 3e-37 | 129.2 | Phosphatidylinositol-4-phosphate 5-Kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。