当前解析结果
SmilChr02G004454| 统一新 Gene ID | SmilChr02G004454 |
|---|---|
| 名称 | SmilChr02G004454 |
| 描述 | wall-associated receptor kinase-like 10 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66937617 - 66938057 / - |
| NCBI Gene ID | LOC131009906 |
|---|---|
| GeneID | 131009906 |
| locus_tag | - |
| NCBI Name | LOC131009906 |
| 原始查询 | LOC131009906 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 10 |
| 产物 | wall-associated receptor kinase-like 10 |
| Arabidopsis | AT1G16260 (AT1G16260)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838195] identity=28; qcov=0.808; evalue=4.28e-14; confidence=low |
| Rice | Os04g0220300 (OsWAK30)- identity=44; qcov=0.575; evalue=5.53e-17; confidence=low |
| GO | GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009906 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057793290.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057793290.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793290.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793290.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793290.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66937618 |
C |
CA |
1bp_insertion | frameshift_variant | 70 | A10,A11,A15,A19,A3,A6,B100,B104,B114,B115,B120,B121,B124,B128,B129,B13,B135,B136,B137,B138,B19,B27,B33,B35,B40,B41,B5,B51,B55,B6,B60,B62,B63,B69,B72,B75,B77,B84,B86,B90,B92,B93,B94,B99,C2,C21,C28,C33,C38,C39,C45,C52,C63,C67,C70,C71,C73,C74,C75,C77,C80,C81,C82,C83,C87,D1,D11,D2,D3,D4 |
Chr2:66937620 |
GC |
G |
1bp_deletion | frameshift_variant | 5 | A20,B106,B115,B36,B56 |
Chr2:66937620 |
GC |
G |
1bp_deletion | CDS_variant | 5 | A20,B106,B115,B36,B56 |
Chr2:66937636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B106,B115,B36 |
Chr2:66937637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B106,B115,B36 |
Chr2:66937666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B51,B94,D11 |
Chr2:66937688 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B30,B47 |
Chr2:66937688 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B30,B47 |
Chr2:66937730 |
ATG |
A |
2bp_deletion | frameshift_variant | 4 | A20,B119,B36,C8 |
Chr2:66937730 |
ATG |
A |
2bp_deletion | CDS_variant | 4 | A20,B119,B36,C8 |
Chr2:66937738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B119,B36,B96,C8 |
Chr2:66937800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B103,B127,B54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793290.1PF13947
GUB_WAK_bind 20-81 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793290.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 20 | 81 | 4.6e-11 | 43.6 | Wall-associated receptor kinase galacturonan-binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。