当前解析结果
SmilChr02G004669| 统一新 Gene ID | SmilChr02G004669 |
|---|---|
| 名称 | SmilChr02G004669 |
| 描述 | uncharacterized SmilChr02G004669 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69048687 - 69051975 / - |
| NCBI Gene ID | LOC131009928 |
|---|---|
| GeneID | 131009928 |
| locus_tag | - |
| NCBI Name | LOC131009928 |
| 原始查询 | LOC131009928 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0357300; species=rice; confidence=low |
| 产物 | hit=Os04g0357300; species=rice; confidence=low |
| Arabidopsis | AT5G28780 (AT5G28780)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:832993] identity=36; qcov=0.252; evalue=1.88e-41; confidence=weak |
| Rice | Os04g0357300- identity=49.9; qcov=0.435; evalue=4.79e-144; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF13604 (AAA_30); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009928 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793310.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057793310.1 |
| 3 | Telomere | 端粒 | 0.40000 | XP_057793310.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793310.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793310.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69048722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:69049023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B136,B61,B64,B91 |
Chr2:69049089 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C78 |
Chr2:69049089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr2:69049095 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | B117,B37,B68,C10,C45,C48,C66 |
Chr2:69049147 |
TG |
T |
1bp_deletion | frameshift_variant | 6 | A15,B108,B76,B80,C36,C81 |
Chr2:69049156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C65 |
Chr2:69049166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B71,B78,C6 |
Chr2:69049178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B71,B78,C6 |
Chr2:69049212 |
TA |
T |
1bp_deletion | frameshift_variant | 136 | A10,A11,A16,A18,A19,A2,A20,A3,A5,A7,A9,B1,B10,B101,B105,B109,B110,B111,B114,B115,B117,B12,B120,B121,B124,B127,B128,B13,B131,B132,B134,B136,B139,B16,B18,B19,B20,B22,B23,B25,B28,B3,B35,B36,B37,B39,B40,B42,B43,B47,B48,B49,B5,B53,B54,B55,B56,B6,B60,B61,B62,B63,B64,B65,B67,B7,B70,B71,B73,B75,B77,B78,B79,B80,B81,B82,B83,B86,B88,B90,B91,B92,B94,B95,B96,B98,B99,C10,C11,C12,C15,C2,C21,C23,C25,C28,C29,C3,C31,C32,C33,C34,C37,C39,C4,C40,C43,C44,C47,C50,C53,C54,C58,C61,C65,C66,C67,C68,C69,C70,C71,C72,C73,C74,C76,C77,C79,C80,C85,C86,D1,D11,D2,D5,D6,D7 |
Chr2:69049666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:69050025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793310.1PF14214
Helitron_like_N 14-134 aa
PF13604
AAA_30 577-741 aa
PF05970
PIF1 577-784 aa
PF21530
Pif1_2B_dom 875-917 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793310.1 |
Pfam | PF14214 |
Helitron_like_N | Domain | 14 | 134 | 3.3e-43 | 148.8 | Helitron helicase-like domain at N-terminus |
XP_057793310.1 |
Pfam | PF13604 |
AAA_30 | Domain | 577 | 741 | 4.2e-07 | 30.6 | AAA domain |
XP_057793310.1 |
Pfam | PF05970 |
PIF1 | Family | 577 | 784 | 8.3e-72 | 242.1 | PIF1-like helicase |
XP_057793310.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 875 | 917 | 2.1e-17 | 63.3 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。