当前解析结果
SmilChr02G004931| 统一新 Gene ID | SmilChr02G004931 |
|---|---|
| 名称 | SmilChr02G004931 |
| 描述 | uncharacterized SmilChr02G004931 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71307922 - 71309655 / - |
| NCBI Gene ID | LOC131009949 |
|---|---|
| GeneID | 131009949 |
| locus_tag | - |
| NCBI Name | LOC131009949 |
| 原始查询 | LOC131009949 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0357300; species=rice; confidence=low |
| 产物 | hit=Os04g0357300; species=rice; confidence=low |
| Arabidopsis | AT3G51690 (AT3G51690)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332] identity=40.2; qcov=0.606; evalue=1.95e-59; confidence=medium |
| Rice | Os04g0357300- identity=34.3; qcov=0.899; evalue=9.59e-74; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009949 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793329.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057793329.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057793329.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793329.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793329.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71307922 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B35,B95,C14 |
Chr2:71307922 |
T |
TC |
1bp_insertion | CDS_variant | 3 | B35,B95,C14 |
Chr2:71307946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,B32 |
Chr2:71307954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C33 |
Chr2:71307966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,C51,D4 |
Chr2:71307968 |
G |
GT |
1bp_insertion | frameshift_variant | 6 | A20,A5,B15,C33,C50,C64 |
Chr2:71307982 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B15,C64 |
Chr2:71307982 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B15,C64 |
Chr2:71307987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr2:71308037 |
A |
AC |
1bp_insertion | frameshift_variant | 134 | A13,A15,A18,A20,A21,A22,A24,A25,A5,A6,A7,A8,B1,B100,B101,B104,B107,B108,B109,B113,B117,B120,B122,B125,B127,B128,B13,B130,B131,B137,B138,B140,B15,B16,B18,B19,B2,B21,B22,B24,B25,B29,B32,B33,B35,B37,B4,B40,B41,B42,B43,B46,B47,B48,B5,B50,B52,B57,B58,B6,B60,B61,B64,B65,B67,B68,B71,B73,B74,B75,B76,B78,B79,B80,B83,B85,B86,B87,B89,B94,B95,B98,B99,C12,C14,C15,C16,C17,C18,C19,C24,C26,C28,C31,C32,C33,C35,C37,C39,C40,C47,C48,C5,C50,C51,C52,C53,C55,C56,C57,C58,C59,C6,C60,C61,C62,C67,C68,C75,C77,C78,C80,C82,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D9 |
Chr2:71308068 |
C |
CA |
1bp_insertion | frameshift_variant | 5 | B113,B42,B43,B68,C31 |
Chr2:71308068 |
C |
CA |
1bp_insertion | CDS_variant | 5 | B113,B42,B43,B68,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793329.1PF05970
PIF1 40-200 aa
PF21530
Pif1_2B_dom 300-346 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793329.1 |
Pfam | PF05970 |
PIF1 | Family | 40 | 200 | 5.1e-70 | 236.2 | PIF1-like helicase |
XP_057793329.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 300 | 346 | 4.4e-24 | 84.7 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。