Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005212`

染色体: Chr02 坐标: 73335162-73337674 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005212`
名称	SmilChr02G005212
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73335162 - 73337674 / `-`

ID 对照

NCBI Gene ID	`LOC131009971`
GeneID	`131009971`
locus_tag	`-`
NCBI Name	`LOC131009971`
原始查询	`LOC131009971`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=31.4; qcov=0.548; evalue=1.54e-60; confidence=low
Rice	`Os06g0166100` - identity=34.6; qcov=0.615; evalue=5.86e-76; confidence=low
GO	-
KEGG	-
Pfam	PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:131009971

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793350.1`
2	Chromosome	染色体	0.00000	`XP_057793350.1`
3	Centromere	着丝粒	0.00000	`XP_057793350.1`
4	Chromatin	染色质	0.00000	`XP_057793350.1`
5	Telomere	端粒	0.00000	`XP_057793350.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73335217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:73335445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A4,B131,B47
`Chr2:73335454`	`CA`	`C`	1bp_deletion	frameshift_variant	13	A14,A4,B131,B2,B20,B47,B73,B90,C30,C45,C58,C68,D3
`Chr2:73335459`	`A`	`AC`	1bp_insertion	frameshift_variant	15	A14,A4,B131,B15,B2,B20,B47,B73,B90,C16,C30,C45,C58,C68,D3
`Chr2:73335503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr2:73335553`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B40,B93,C19,C67
`Chr2:73335556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B40,B93,C19,C67
`Chr2:73335562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B40,B93,C19,C67
`Chr2:73335579`	`C`	`CAT`	2bp_insertion	frameshift_variant	5	A18,B40,B93,C19,C67
`Chr2:73335579`	`C`	`CAT`	2bp_insertion	CDS_variant	5	A18,B40,B93,C19,C67
`Chr2:73335591`	`T`	`TGG`	2bp_insertion	frameshift_variant	1	B16
`Chr2:73335591`	`T`	`TGG`	2bp_insertion	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793350.1

639 aa

320

639

FAR1

ZSWIM1-3_RNaseH-like

MULE

PF03101 FAR1 94-175 aa PF21056 ZSWIM1-3_RNaseH-like 271-381 aa PF10551 MULE 299-393 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793350.1`	Pfam	`PF03101`	FAR1	Domain	94	175	3.5e-12	47.6	FAR1 DNA-binding domain
`XP_057793350.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	271	381	4.5e-07	30.6	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057793350.1`	Pfam	`PF10551`	MULE	Domain	299	393	1.3e-27	96.7	MULE transposase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937367.1
ATGAGCATAGACTTGAACGTTTCTTGTGGAAATGATGGTGTCGAAGACAGTTATAGCGGCATTGTGGGTGATGATGCATTTCGCAATGATGAAACTGGAAGGAAGGCTGCGGACTTGGAGGAAGACGATATTGAGGTGAGCACCAGTCCCGTCGAAAATGAATCTAGTGGAGATGATGAAGATGTACGAGATTGCGAAGATATGGAAGATTCTAATCGTTTTAATAATTTCGATAATGGTGGAAATGATGAGACAGAAGC...

CDS

1 records

下载 CDS FASTA

LOC131009971
ATGAGCATAGACTTGAACGTTTCTTGTGGAAATGATGGTGTCGAAGACAGTTATAGCGGCATTGTGGGTGATGATGCATTTCGCAATGATGAAACTGGAAGGAAGGCTGCGGACTTGGAGGAAGACGATATTGAGGTGAGCACCAGTCCCGTCGAAAATGAATCTAGTGGAGATGATGAAGATGTACGAGATTGCGAAGATATGGAAGATTCTAATCGTTTTAATAATTTCGATAATGGTGGAAATGATGAGACAGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057793350.1
MSIDLNVSCGNDGVEDSYSGIVGDDAFRNDETGRKAADLEEDDIEVSTSPVENESSGDDEDVRDCEDMEDSNRFNNFDNGGNDETEAVHCSVLCGFSVRKGSQCYFLNTAAVRAKIYHCSCHGSPDNKCSIGRVSVCKRQSYRSNCNAKLRVAREDVESPWKVTIFDNEHNHKLLDPSESYLLRSARNMSQSKKILLVALTSSGIGVSRAYRFLENEAGSRANIGFLRKDVYNVLNSERREMAKVANADANKLLEYFTDK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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