当前解析结果
SmilChr02G005418| 统一新 Gene ID | SmilChr02G005418 |
|---|---|
| 名称 | SmilChr02G005418 |
| 描述 | uncharacterized SmilChr02G005418 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74637606 - 74640149 / - |
| NCBI Gene ID | LOC131010014 |
|---|---|
| GeneID | 131010014 |
| locus_tag | - |
| NCBI Name | LOC131010014 |
| 原始查询 | LOC131010014 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AT5G01140; symbol=AT5G01140; hit=AT5G01140; species=arabidopsis; confidence=low |
| 产物 | AT5G01140; symbol=AT5G01140; hit=AT5G01140; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G01140 (AT5G01140)- identity=27.1; qcov=0.703; evalue=9.84e-18; confidence=low |
| Rice | Os04g0594700- identity=30.9; qcov=0.275; evalue=1.25e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF05056 (DUF674) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010014 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793392.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057793392.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793392.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793392.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793392.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74637693 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | C63 |
Chr2:74637693 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C63 |
Chr2:74637696 |
TAG |
T |
2bp_deletion | frameshift_variant | 46 | A11,A19,A23,A4,B104,B111,B126,B127,B133,B137,B2,B20,B24,B26,B28,B38,B41,B46,B58,B63,B66,B69,B70,B76,B80,B90,B92,B94,B99,C2,C32,C37,C38,C47,C48,C5,C50,C51,C65,C68,C7,C77,C82,C84,C9,D2 |
Chr2:74637739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr2:74637881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C35 |
Chr2:74637894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B42,B43,B77,C35 |
Chr2:74637915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C35 |
Chr2:74638087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,D9 |
Chr2:74638204 |
GA |
G |
1bp_deletion | frameshift_variant | 60 | A16,A21,A23,A8,A9,B111,B115,B12,B126,B128,B133,B138,B14,B140,B2,B20,B21,B24,B25,B31,B36,B39,B40,B52,B59,B62,B64,B66,B69,B75,B8,B85,B86,B88,B99,C14,C19,C2,C22,C25,C26,C36,C37,C39,C43,C46,C47,C48,C51,C52,C6,C64,C65,C67,C7,C72,C80,D2,D5,D6 |
Chr2:74638282 |
ATG |
A |
2bp_deletion | frameshift_variant | 7 | B134,B27,B30,B76,B98,C67,C83 |
Chr2:74638285 |
G |
GTA |
2bp_insertion | frameshift_variant | 7 | B134,B27,B30,B76,B98,C67,C83 |
Chr2:74638333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B19,B3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793392.1PF05056
DUF674 7-54 aa
PF05056
DUF674 127-277 aa
PF05056
DUF674 299-365 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793392.1 |
Pfam | PF05056 |
DUF674 | Family | 7 | 54 | 4.7e-50 | 171.5 | Protein of unknown function (DUF674) |
XP_057793392.1 |
Pfam | PF05056 |
DUF674 | Family | 127 | 277 | 4.7e-50 | 171.5 | Protein of unknown function (DUF674) |
XP_057793392.1 |
Pfam | PF05056 |
DUF674 | Family | 299 | 365 | 4.7e-50 | 171.5 | Protein of unknown function (DUF674) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。