Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005515`

染色体: Chr02 坐标: 75255863-75262766 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005515`
名称	SmilChr02G005515
描述	receptor-like protein EIX1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75255863 - 75262766 / `-`

ID 对照

NCBI Gene ID	`LOC131010025`
GeneID	`131010025`
locus_tag	`-`
NCBI Name	`LOC131010025`
原始查询	`LOC131010025`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX1
产物	receptor-like protein EIX1
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=36.1; qcov=0.703; evalue=6.48e-78; confidence=medium
Rice	`Os06g0140200` (OSJNBa0041F13.38) - identity=36.9; qcov=0.677; evalue=3.64e-81; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131010025

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057793402.1`
2	Nucleus	细胞核	0.00000	`XP_057793402.1`
3	Chromosome	染色体	0.00000	`XP_057793402.1`
4	Centromere	着丝粒	0.00000	`XP_057793402.1`
5	Chromatin	染色质	0.00000	`XP_057793402.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75255992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr2:75256016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:75256031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr2:75256034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr2:75256049`	`C`	`CTT`	2bp_insertion	frameshift_variant	1	C18
`Chr2:75256049`	`C`	`CTT`	2bp_insertion	CDS_variant	1	C18
`Chr2:75256073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B8,B83,C4,C76
`Chr2:75256080`	`TA`	`T`	1bp_deletion	frameshift_variant	3	B120,B35,C32
`Chr2:75256080`	`TA`	`T`	1bp_deletion	CDS_variant	3	B120,B35,C32
`Chr2:75256083`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C76
`Chr2:75256083`	`T`	`TC`	1bp_insertion	CDS_variant	1	C76
`Chr2:75256084`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793402.1

817 aa

408

817

LRR_1

LRR_6

LRR_1

LRRNT_2

LRR_1

LRR_8

LRR_6

LRR_1

PF00560 LRR_1 34-55 aa PF00560 LRR_1 58-78 aa PF13516 LRR_6 81-95 aa PF00560 LRR_1 82-103 aa PF00560 LRR_1 106-123 aa PF08263 LRRNT_2 247-271 aa PF00560 LRR_1 358-378 aa PF00560 LRR_1 382-401 aa PF00560 LRR_1 408-429 aa PF13855 LRR_8 484-544 aa PF13516 LRR_6 626-640 aa PF00560 LRR_1 629-645 aa PF00560 LRR_1 675-695 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	34	55	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	58	78	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF13516`	LRR_6	Repeat	81	95	2.3e-11	43.5	Leucine Rich repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	82	103	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	106	123	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF08263`	LRRNT_2	Family	247	271	0.00035	21.5	Leucine rich repeat N-terminal domain
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	358	378	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	382	401	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	408	429	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF13855`	LRR_8	Repeat	484	544	4.2e-38	129.6	Leucine rich repeat
`XP_057793402.1`	Pfam	`PF13516`	LRR_6	Repeat	626	640	2.3e-11	43.5	Leucine Rich repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	629	645	1.2e-45	144.3	Leucine Rich Repeat
`XP_057793402.1`	Pfam	`PF00560`	LRR_1	Repeat	675	695	1.2e-45	144.3	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937419.1
ATGATCAATCTTCCAAATGAGGAAATTCGACCTGTTTATGAATATTCGGCAATTCAATGGAAAGGTCAAGAATCGGAATATAGGAAAAATCTCAAGCTTCTCAAACTCATTGATTTTTCAAGCAATAGTTTGACCGGAAACATTCCCAAATCATTTTCCAGTATGCTTGGATTAATTTCCTTGAACCTATCAAGAAATAGTTTGACAGGAAATATAATTCGAGATATTGGTGAGATGGAAATGTTAGAATGTCTTGACCT...

CDS

1 records

下载 CDS FASTA

LOC131010025
ATGATCAATCTTCCAAATGAGGAAATTCGACCTGTTTATGAATATTCGGCAATTCAATGGAAAGGTCAAGAATCGGAATATAGGAAAAATCTCAAGCTTCTCAAACTCATTGATTTTTCAAGCAATAGTTTGACCGGAAACATTCCCAAATCATTTTCCAGTATGCTTGGATTAATTTCCTTGAACCTATCAAGAAATAGTTTGACAGGAAATATAATTCGAGATATTGGTGAGATGGAAATGTTAGAATGTCTTGACCT...

Protein

1 records

下载 Protein FASTA

XP_057793402.1
MINLPNEEIRPVYEYSAIQWKGQESEYRKNLKLLKLIDFSSNSLTGNIPKSFSSMLGLISLNLSRNSLTGNIIRDIGEMEMLECLDLSHNQFSGELPTSLAQLQYLAVLDLSNNDLIGKIPTSTQLQSFNASAYDENDGLCGPPLASCPEDSLRPSTTNPNEKDDNSLSFMQEVCISLGFGFIFGFWGVVGTFILKKSWRIAYFNFWDAVGDWFYVRIAVGGQARGYMKKCGRSVARDGAEVRCIEREREALLSFKNSLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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