当前解析结果
SmilChr02G003047| 统一新 Gene ID | SmilChr02G003047 |
|---|---|
| 名称 | SmilChr02G003047 |
| 描述 | F-box protein At3g07870-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 51267999 - 51272313 / + |
| NCBI Gene ID | LOC131010064 |
|---|---|
| GeneID | 131010064 |
| locus_tag | - |
| NCBI Name | LOC131010064 |
| 原始查询 | LOC131010064 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein At3g07870-like |
| 产物 | F-box protein At3g07870-like |
| Arabidopsis | AT3G07870 (AT3G07870)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819978] identity=28.2; qcov=0.811; evalue=4.35e-13; confidence=low |
| Rice | Os06g0170866- identity=25; qcov=0.709; evalue=1.96e-07; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010064 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057793441.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057793442.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057793442.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793441.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793441.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:51271126 |
G |
GTA |
2bp_insertion | frameshift_variant | 1 | D10 |
Chr2:51271126 |
G |
GTA |
2bp_insertion | CDS_variant | 1 | D10 |
Chr2:51271162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C22 |
Chr2:51271196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D9 |
Chr2:51271269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B78 |
Chr2:51271271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D9 |
Chr2:51271343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B72,B94,C74 |
Chr2:51271415 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B35,C83 |
Chr2:51271415 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B35,C83 |
Chr2:51271471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D9 |
Chr2:51271477 |
CTA |
C |
2bp_deletion | frameshift_variant | 2 | B41,C22 |
Chr2:51271477 |
CTA |
C |
2bp_deletion | CDS_variant | 2 | B41,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793441.1PF00646
F-box 21-58 aa
PF12937
F-box-like 22-56 aa
PF08268
FBA_3 102-306 aa
PF24750
b-prop_At3g26010-like 109-320 aa
PF07734
FBA_1 118-311 aa
XP_057793442.1PF08268
FBA_3 3-177 aa
PF07734
FBA_1 3-182 aa
PF24750
b-prop_At3g26010-like 4-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793441.1 |
Pfam | PF00646 |
F-box | Domain | 21 | 58 | 2.2e-08 | 34.4 | F-box domain |
XP_057793441.1 |
Pfam | PF12937 |
F-box-like | Domain | 22 | 56 | 1.3e-06 | 28.8 | F-box-like |
XP_057793441.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 102 | 306 | 1.2e-16 | 61.4 | F-box associated beta propeller domain |
XP_057793441.1 |
Pfam | PF24750 |
b-prop_At3g26010-like | Repeat | 109 | 320 | 8.6e-16 | 58.7 | F-box protein At3g26010-like, beta-propeller |
XP_057793441.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 118 | 311 | 2.6e-24 | 86.5 | F-box associated beta propeller domain |
XP_057793442.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 3 | 177 | 9.8e-15 | 55.1 | F-box associated beta propeller domain |
XP_057793442.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 3 | 182 | 2.3e-21 | 76.9 | F-box associated beta propeller domain |
XP_057793442.1 |
Pfam | PF24750 |
b-prop_At3g26010-like | Repeat | 4 | 191 | 8.5e-12 | 45.5 | F-box protein At3g26010-like, beta-propeller |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。