Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003079`

染色体: Chr02 坐标: 51717236-51718797 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003079`
名称	SmilChr02G003079
描述	F-box protein At3g07870-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	51717236 - 51718797 / `-`

ID 对照

NCBI Gene ID	`LOC131010095`
GeneID	`131010095`
locus_tag	`-`
NCBI Name	`LOC131010095`
原始查询	`LOC131010095`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein At3g07870-like
产物	F-box protein At3g07870-like
Arabidopsis	`AT3G07870` (AT3G07870) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819978] identity=29; qcov=0.933; evalue=6.92e-30; confidence=low
Rice	`Os09g0448100` (OsFbox489) - identity=28.2; qcov=0.794; evalue=1.5e-22; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131010095

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793477.1`
2	Cytoplasm	细胞质	0.80000	`XP_057793477.1`
3	Cytosol	细胞质基质	0.20000	`XP_057793477.1`
4	Chromosome	染色体	0.00000	`XP_057793477.1`
5	Centromere	着丝粒	0.00000	`XP_057793477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:51717408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:51717516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr2:51717525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:51717735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:51717756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,B110
`Chr2:51717922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:51717964`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	A9
`Chr2:51717964`	`TCC`	`T`	2bp_deletion	CDS_variant	1	A9
`Chr2:51718053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:51718058`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A9
`Chr2:51718058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:51718101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793477.1

388 aa

194

388

F-box

F-box-like

FBA_1

FBA_3

PF00646 F-box 19-57 aa PF12937 F-box-like 20-57 aa PF07734 FBA_1 89-376 aa PF08268 FBA_3 111-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793477.1`	Pfam	`PF00646`	F-box	Domain	19	57	2.5e-09	37.4	F-box domain
`XP_057793477.1`	Pfam	`PF12937`	F-box-like	Domain	20	57	5.1e-10	39.7	F-box-like
`XP_057793477.1`	Pfam	`PF07734`	FBA_1	Repeat	89	376	8.5e-24	84.8	F-box associated beta propeller domain
`XP_057793477.1`	Pfam	`PF08268`	FBA_3	Repeat	111	340	1e-15	58.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937494.1
CACTCTAGTACGCTCTAGGTACATTCCACGTAGAACTTGCATCATCCTAAAGGATAACTTGGCCTACCTTATCCACAACGGAAGAGTGAAAATAAATATTAACAGAAAAAAAGGAAAAAGAAAAAGAAGATTGAAGAAAATATCCACTCTTATTTAATCTGTGCCGCACCAAGACTGTCTATGGAGCCACTTTACACTTTATAAATCCACTTCCATCTCCTTCAATTCAATTCAAACCCTAATCAAAACCCCATTGCCAT...

CDS

1 records

下载 CDS FASTA

LOC131010095
ATGGTGTTCATCGTCCCGCCCCCAAAATCCGCCGCCAACGGCAGCGACATCCTGATGAGCATCCCGTCCCACATCATCATCGAGATCCTCTCACGTCTCCCGGCGAAATCCCTCGTCCAGTGCAAATCCGTCTGCAAGCAGTGGCTCGATCTGACCTCCGATCCCTACTTCGCCAAGCTGCATTTCACCAGATCAAAGCCCGGCGTCGCGATCCACCAATCGGAGCCGTCGAAGAACCTCCTCAGAGTCGCCGATTTCGA...

Protein

1 records

下载 Protein FASTA

XP_057793477.1
MVFIVPPPKSAANGSDILMSIPSHIIIEILSRLPAKSLVQCKSVCKQWLDLTSDPYFAKLHFTRSKPGVAIHQSEPSKNLLRVADFDDFHDPTAEIDLKSLSPSPEDAAIVVDGSVKGLLLLRDANYKHEALYVCNPLTREYIELASPKQVVRYPSVVTHGFGVTKRSEEFKVVRIYQEREMDPGSGSCLGIPNSECQVYTLGTAEWRGVGDAPFAYDGRLIGQFFRGNLHWLVEDLNGQELISCFDLENESFHPFPPPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器