当前解析结果
SmilChr02G003092| 统一新 Gene ID | SmilChr02G003092 |
|---|---|
| 名称 | SmilChr02G003092 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 51783059 - 51785956 / - |
| NCBI Gene ID | LOC131010103 |
|---|---|
| GeneID | 131010103 |
| locus_tag | - |
| NCBI Name | LOC131010103 |
| 原始查询 | LOC131010103 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 |
| Arabidopsis | AT1G34300 (AT1G34300)lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840330] identity=52.5; qcov=0.945; evalue=0; confidence=high |
| Rice | Os03g0838100 (OsRLCK121)- identity=52.9; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010103 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793485.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793485.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793485.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793485.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793485.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:51783474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B21,B37,B68,B73 |
Chr2:51783475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B21,B37,B68,B73 |
Chr2:51783491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B21,B37,B68,B73 |
Chr2:51783515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B21,B95,C12 |
Chr2:51783542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:51783546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B12,B68,B95 |
Chr2:51783554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B12,B68,B95 |
Chr2:51783627 |
T |
TTG |
2bp_insertion | frameshift_variant | 8 | B103,B12,B129,B21,B68,B73,B95,C12 |
Chr2:51783629 |
TCC |
T |
2bp_deletion | frameshift_variant | 8 | B103,B12,B129,B21,B68,B73,B95,C12 |
Chr2:51783990 |
TCA |
T |
2bp_deletion | frameshift_variant | 8 | B103,B12,B129,B21,B37,B68,B73,C12 |
Chr2:51784048 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | C83,D3 |
Chr2:51784048 |
CA |
C |
1bp_deletion | CDS_variant | 2 | C83,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793485.1PF01453
B_lectin 83-158 aa
PF08276
PAN_2 343-390 aa
PF07714
PK_Tyr_Ser-Thr 490-763 aa
PF00069
Pkinase 491-761 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793485.1 |
Pfam | PF01453 |
B_lectin | Repeat | 83 | 158 | 1.1e-10 | 42.6 | D-mannose binding lectin |
XP_057793485.1 |
Pfam | PF08276 |
PAN_2 | Domain | 343 | 390 | 0.00017 | 22.4 | PAN-like domain |
XP_057793485.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 490 | 763 | 1e-43 | 150.2 | Protein tyrosine and serine/threonine kinase |
XP_057793485.1 |
Pfam | PF00069 |
Pkinase | Domain | 491 | 761 | 5e-48 | 164.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。