当前解析结果
SmilChr02G003097| 统一新 Gene ID | SmilChr02G003097 |
|---|---|
| 名称 | SmilChr02G003097 |
| 描述 | putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 51832350 - 51841711 / - |
| NCBI Gene ID | LOC131010106 |
|---|---|
| GeneID | 131010106 |
| locus_tag | - |
| NCBI Name | LOC131010106 |
| 原始查询 | LOC131010106 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D |
| 产物 | putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D |
| Arabidopsis | AT1G34260 (FAB1D)FORMS APLOID AND BINUCLEATE CELLS 1A [Source:NCBI gene (formerly Entrezgene);Acc:840326] identity=46.3; qcov=0.872; evalue=0; confidence=high |
| Rice | Os08g0104700- identity=43.2; qcov=0.594; evalue=0; confidence=medium |
| GO | GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00118 (Cpn60_TCP1); PF01504 (PIP5K) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010106 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793488.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793488.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793488.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793488.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793488.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:51832696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C41,C49 |
Chr2:51832770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr2:51832782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B35,B5,B93 |
Chr2:51833041 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A21 |
Chr2:51833041 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A21 |
Chr2:51833049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:51833222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B10,B94,C74 |
Chr2:51833305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:51833803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B41,C5 |
Chr2:51833823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C83,D3 |
Chr2:51833981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:51834124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B35,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793488.1PF00118
Cpn60_TCP1 244-514 aa
PF01504
PIP5K 1376-1540 aa
PF01504
PIP5K 1542-1595 aa
XP_057793489.1PF00118
Cpn60_TCP1 238-508 aa
PF01504
PIP5K 1370-1534 aa
PF01504
PIP5K 1536-1589 aa
XP_057793490.1PF00118
Cpn60_TCP1 205-476 aa
PF01504
PIP5K 1338-1502 aa
PF01504
PIP5K 1504-1557 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793488.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 244 | 514 | 4.8e-22 | 79.0 | TCP-1/cpn60 chaperonin family |
XP_057793488.1 |
Pfam | PF01504 |
PIP5K | Family | 1376 | 1540 | 2.8e-46 | 158.8 | Phosphatidylinositol-4-phosphate 5-Kinase |
XP_057793488.1 |
Pfam | PF01504 |
PIP5K | Family | 1542 | 1595 | 2.8e-46 | 158.8 | Phosphatidylinositol-4-phosphate 5-Kinase |
XP_057793489.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 238 | 508 | 4.9e-22 | 79.0 | TCP-1/cpn60 chaperonin family |
XP_057793489.1 |
Pfam | PF01504 |
PIP5K | Family | 1370 | 1534 | 2.8e-46 | 158.8 | Phosphatidylinositol-4-phosphate 5-Kinase |
XP_057793489.1 |
Pfam | PF01504 |
PIP5K | Family | 1536 | 1589 | 2.8e-46 | 158.8 | Phosphatidylinositol-4-phosphate 5-Kinase |
XP_057793490.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 205 | 476 | 4.7e-22 | 79.0 | TCP-1/cpn60 chaperonin family |
XP_057793490.1 |
Pfam | PF01504 |
PIP5K | Family | 1338 | 1502 | 2.7e-46 | 158.8 | Phosphatidylinositol-4-phosphate 5-Kinase |
XP_057793490.1 |
Pfam | PF01504 |
PIP5K | Family | 1504 | 1557 | 2.7e-46 | 158.8 | Phosphatidylinositol-4-phosphate 5-Kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。