Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003106

染色体: Chr02 坐标: 51983801-52028202 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003106
名称SmilChr02G003106
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向51983801 - 52028202 / +

ID 对照

NCBI Gene IDLOC131010112
GeneID131010112
locus_tag-
NCBI NameLOC131010112
原始查询LOC131010112

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT3G47570 (AT3G47570)
Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911]
identity=40; qcov=0.87; evalue=0; confidence=medium
RiceOs11g0694600
-
identity=38.8; qcov=1.01; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGGsmil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131010112

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057793495.1
2 Nucleus 细胞核 0.00000 XP_057793495.1
3 Chromosome 染色体 0.00000 XP_057793495.1
4 Centromere 着丝粒 0.00000 XP_057793495.1
5 Chromatin 染色质 0.00000 XP_057793495.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:51984371 G A EMS_canonical_SNV CDS_variant 2 B101,D11
Chr2:51984377 CA C 1bp_deletion frameshift_variant 7 A4,B101,B22,B51,B60,B79,C16
Chr2:51984387 C T EMS_canonical_SNV CDS_variant 1 B8
Chr2:51984390 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:51984391 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:51984410 G A EMS_canonical_SNV CDS_variant 2 C72,C73
Chr2:51984411 G A EMS_canonical_SNV CDS_variant 2 C10,C18
Chr2:51984423 C T EMS_canonical_SNV CDS_variant 4 B32,B6,C63,C83
Chr2:51984487 C T EMS_canonical_SNV CDS_variant 2 B26,C5
Chr2:51984526 G A EMS_canonical_SNV CDS_variant 1 C32
Chr2:51984546 C T EMS_canonical_SNV CDS_variant 3 B26,B41,C5
Chr2:51984759 T TGA 2bp_insertion frameshift_variant 3 A4,B109,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793495.1
1090 aa
N
1
545
1090
LRRNT_2
LRR_6
LRR_1
LRR_1
LRR_8
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 34-73 aa PF13516 LRR_6 100-115 aa PF00560 LRR_1 103-123 aa PF00560 LRR_1 127-144 aa PF13855 LRR_8 175-234 aa PF00560 LRR_1 202-222 aa PF23598 LRR_14 267-460 aa PF00560 LRR_1 271-293 aa PF13855 LRR_8 320-379 aa PF00560 LRR_1 368-389 aa PF13516 LRR_6 489-502 aa PF00560 LRR_1 490-512 aa PF00560 LRR_1 612-631 aa PF00560 LRR_1 633-655 aa PF00560 LRR_1 658-679 aa PF00069 Pkinase 800-1070 aa PF07714 PK_Tyr_Ser-Thr 803-1071 aa
XP_057793496.1
1090 aa
N
1
545
1090
LRRNT_2
LRR_6
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 34-73 aa PF13516 LRR_6 100-115 aa PF00560 LRR_1 103-123 aa PF13855 LRR_8 152-211 aa PF00560 LRR_1 176-198 aa PF00560 LRR_1 202-222 aa PF13855 LRR_8 266-306 aa PF00560 LRR_1 271-293 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 368-389 aa PF13516 LRR_6 489-502 aa PF00560 LRR_1 490-512 aa PF00560 LRR_1 612-631 aa PF00560 LRR_1 633-655 aa PF00560 LRR_1 658-679 aa PF00069 Pkinase 800-1070 aa PF07714 PK_Tyr_Ser-Thr 803-1071 aa
XP_057793497.1
1080 aa
N
1
540
1080
LRRNT_2
LRR_6
LRR_1
LRR_1
LRR_8
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 24-63 aa PF13516 LRR_6 90-105 aa PF00560 LRR_1 93-113 aa PF00560 LRR_1 117-134 aa PF13855 LRR_8 165-224 aa PF00560 LRR_1 192-212 aa PF23598 LRR_14 258-450 aa PF00560 LRR_1 261-283 aa PF13855 LRR_8 310-369 aa PF00560 LRR_1 358-379 aa PF13516 LRR_6 479-492 aa PF00560 LRR_1 480-502 aa PF00560 LRR_1 602-621 aa PF00560 LRR_1 623-645 aa PF00560 LRR_1 648-669 aa PF00069 Pkinase 790-1060 aa PF07714 PK_Tyr_Ser-Thr 793-1061 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793495.1 Pfam PF08263 LRRNT_2 Family 34 73 2.3e-10 41.3 Leucine rich repeat N-terminal domain
XP_057793495.1 Pfam PF13516 LRR_6 Repeat 100 115 2.6e-05 24.6 Leucine Rich repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 103 123 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 127 144 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF13855 LRR_8 Repeat 175 234 8.2e-41 138.3 Leucine rich repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 202 222 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF23598 LRR_14 Repeat 267 460 4.5e-41 141.5 Leucine-rich repeat region
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 271 293 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF13855 LRR_8 Repeat 320 379 8.2e-41 138.3 Leucine rich repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 368 389 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF13516 LRR_6 Repeat 489 502 2.6e-05 24.6 Leucine Rich repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 490 512 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 612 631 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 633 655 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF00560 LRR_1 Repeat 658 679 2.2e-56 176.3 Leucine Rich Repeat
XP_057793495.1 Pfam PF00069 Pkinase Domain 800 1070 3e-40 139.0 Protein kinase domain
XP_057793495.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 803 1071 3.4e-40 138.7 Protein tyrosine and serine/threonine kinase
XP_057793496.1 Pfam PF08263 LRRNT_2 Family 34 73 1.2e-10 42.2 Leucine rich repeat N-terminal domain
XP_057793496.1 Pfam PF13516 LRR_6 Repeat 100 115 7.4e-06 26.3 Leucine Rich repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 103 123 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF13855 LRR_8 Repeat 152 211 1.7e-42 143.7 Leucine rich repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 176 198 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 202 222 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF13855 LRR_8 Repeat 266 306 1.7e-42 143.7 Leucine rich repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 271 293 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 295 317 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 368 389 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF13516 LRR_6 Repeat 489 502 7.4e-06 26.3 Leucine Rich repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 490 512 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 612 631 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 633 655 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00560 LRR_1 Repeat 658 679 6.5e-56 174.9 Leucine Rich Repeat
XP_057793496.1 Pfam PF00069 Pkinase Domain 800 1070 3e-40 139.0 Protein kinase domain
XP_057793496.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 803 1071 3.3e-40 138.7 Protein tyrosine and serine/threonine kinase
XP_057793497.1 Pfam PF08263 LRRNT_2 Family 24 63 2.2e-10 41.3 Leucine rich repeat N-terminal domain
XP_057793497.1 Pfam PF13516 LRR_6 Repeat 90 105 2.2e-05 24.8 Leucine Rich repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 93 113 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 117 134 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF13855 LRR_8 Repeat 165 224 8.1e-41 138.3 Leucine rich repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 192 212 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF23598 LRR_14 Repeat 258 450 4.9e-41 141.4 Leucine-rich repeat region
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 261 283 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF13855 LRR_8 Repeat 310 369 8.1e-41 138.3 Leucine rich repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 358 379 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF13516 LRR_6 Repeat 479 492 2.2e-05 24.8 Leucine Rich repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 480 502 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 602 621 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 623 645 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF00560 LRR_1 Repeat 648 669 1.7e-56 176.6 Leucine Rich Repeat
XP_057793497.1 Pfam PF00069 Pkinase Domain 790 1060 3e-40 139.0 Protein kinase domain
XP_057793497.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 793 1061 3.3e-40 138.8 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057937514.1
AGCTATAGTAGTTTGTTAAAGATTAACATGTGTGGAGGAGCCAATCCACACAAAGGTACTTTAGAAAAAAGTGGATGGCTTTTTCTTTTTCCGTTTCCACTAAACAACTTCGAGAATTGATTGATCTTCTTCGTCTTCGTCGTCGTCTTCATCTTAAGAGCTTTCAAAAGATTGAAGCAAGTAAAGATTAAGATATGTGGAGAAGCCAATCCATACAAAGCGTTACACTGATCGCCTCCTCCTTACCATTTTCCAATTCA...
XM_057937512.1
CTATAGTAGTTTGTTAAAGATTAACATGTGTGGAGGAGCCAATCCACACAAAGGTACTTTAGAAAAAAGTGGATGGCTTTTTCTTTTTCCGTTTCCACTAAACAACTTCGAGAATTGATTGATCTTCTTCGTCTTCGTCGTCGTCTTCATCTTAAGAGCTTTCAAAAGATTGAAGCAAGTAAAGATTAAGATATGTGGAGAAGCCAATCCATACAAAGGTACTTTAGGAAAAAGTGGATGGCTTTTTCTTTTTCCGTTTC...

CDS

3 records

下载 CDS FASTA
LOC131010112
ATGTGGAGAAGCCAATCCATACAAAGCGTTACACTGATCGCCTCCTCCTTACCATTTTCCAATTCAACCACTGATCAAGATGCACTACTCGCCTTCAAAACTGCCATCAGTTTGGACCCCAATTCCATCCTGATCAGCAACTGGTCCACTAATGCTCCCATCTGTAGCTGGACCGGCGTCTCCTGCAGCCTCGACCACCAAAGGGTCACGGCCCTCAATCTCTCCGGCTTTGGCCTCCAAGGAACTCTCTCTCCACATCT...
LOC131010112
ATGGAGGCCTTCTCCTTTTTCTTCTCCCTTGCTCTCATGCTCTTGACATTAAACAGCGTTACACTGATCGCCTCCTCCTTACCATTTTCCAATTCAACCACTGATCAAGATGCACTACTCGCCTTCAAAACTGCCATCAGTTTGGACCCCAATTCCATCCTGATCAGCAACTGGTCCACTAATGCTCCCATCTGTAGCTGGACCGGCGTCTCCTGCAGCCTCGACCACCAAAGGGTCACGGCCCTCAATCTCTCCGGCTT...

Protein

3 records

下载 Protein FASTA
XP_057793495.1
MEAFSFFFSLALMLLTLNSVTLIASSLPFSNSTTDQDALLAFKTAISLDPNSILISNWSTNAPICSWTGVSCSLDHQRVTALNLSGFGLQGTLSPHLGNLTFLRSLDMSYNNFTGSIPSELSNIRRLHTLNLASNQLTGNLPSGVFTNMSVLVEIDLMSNELIGQLPSDICSNTPKLKRLSLRVNQINGKIPKSIYKCREMEELVLSYNQFNGSIPTEIGNLTKLTFLGLSSNHVEGEIPSSIFNISSLEFVYLGENSLS...
XP_057793496.1
MEAFSFFFSLALMLLTLNSVTLVASSLPFSNSTTDQDALLAFKNGISLDPNSILISNWSTNAPICSWTGVSCSLDHQRVTALNLSSFGLQGTLSPHLGNLTFLRSLDMSYNNFTGSIPSELSNIRRLHSLNLASNQLTGSLRSGVFTNMSVLVEIDLMSNELTGQLPSDICSNTPKLKRLSLRENQINGKIPKSIYKCREMEELNLSYNQFNGNIPTEIGNLTKLTYLGLSSNHVEGEVPSSISNISSLEFVFLGGNSLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器