Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003134`

染色体: Chr02 坐标: 52357494-52359890 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003134`
名称	SmilChr02G003134
描述	F-box protein CPR1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52357494 - 52359890 / `-`

ID 对照

NCBI Gene ID	`LOC131010135`
GeneID	`131010135`
locus_tag	`-`
NCBI Name	`LOC131010135`
原始查询	`LOC131010135`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein CPR1-like
产物	F-box protein CPR1-like
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=22.7; qcov=0.777; evalue=1.95e-14; confidence=weak
Rice	`Os09g0372900` (OsFbox482) - identity=24.6; qcov=0.754; evalue=3.21e-14; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131010135

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793529.1`
2	Cytoplasm	细胞质	0.60000	`XP_057793529.1`
3	Cytosol	细胞质基质	0.20000	`XP_057793529.1`
4	Chromosome	染色体	0.00000	`XP_057793529.1`
5	Centromere	着丝粒	0.00000	`XP_057793529.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52357748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B76,C85
`Chr2:52357765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:52357768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:52357794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:52358121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:52358133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B24
`Chr2:52358141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:52358293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C86
`Chr2:52358424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B135,B96,C19,C53
`Chr2:52358475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C45,D3
`Chr2:52358510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:52358711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793529.1

426 aa

213

426

F-box-like

FBA_3

FBA_1

PF12937 F-box-like 31-68 aa PF08268 FBA_3 102-399 aa PF07734 FBA_1 162-413 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793529.1`	Pfam	`PF12937`	F-box-like	Domain	31	68	8.7e-06	26.1	F-box-like
`XP_057793529.1`	Pfam	`PF08268`	FBA_3	Repeat	102	399	7.4e-17	62.1	F-box associated beta propeller domain
`XP_057793529.1`	Pfam	`PF07734`	FBA_1	Repeat	162	413	8.1e-22	78.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937546.1
GCAAAAACCCTTCAAATATGAAACACATGAAAGCCAAAACCAGAAAAATAACCAAATCAAGGAAACTTTCCTCGAGCTTATTTAGCTATAAAGAGCATAATCTTCATACTTCAAATAGGTTTTCAGGGCAAGGTCGCCTAGAAAAACAAAAAATTAAAAAAAAAAAAAAAAAAAAGGCTGATGTGTATGGGTGTTCTTGCTTACAGTAGTTGGGCAGCTCATCATGTCTCTCTTTCTAAATATGGATATACATTTCTCCA...

CDS

1 records

下载 CDS FASTA

LOC131010135
ATGAAGAAGATGAAACATGAGAGATGTAAAAAATCAAAAAAACAGAAAGATGCTGCCCAAAATCCCAAAATGGGCGAAGATTTCTTGACATTTCTACCATCAGAAATCATAATCAATATCCTCTCATCAAGACTCCCCATTCGCACCACGATGAGCTGCACGGCTGTTTGTAAGCCATGGCTTGATTTGCTCAGGACTCCCGAGTTTGTGAAATCCCATATTTCTAAATCAGTCCCAGGCCTCGCTGTCTTTTTAGAGGG...

Protein

1 records

下载 Protein FASTA

XP_057793529.1
MKKMKHERCKKSKKQKDAAQNPKMGEDFLTFLPSEIIINILSSRLPIRTTMSCTAVCKPWLDLLRTPEFVKSHISKSVPGLAVFLEGEYPKPYKVFEYVDELNNPKRRVPRWNMTLNFNLPIDKPPYSSVDGLLFLCTRGMMSREIFKSGIFRQEFIRWPRDLFICNPITREYIKLPCPLEFSSSKSKVHMDTFGFGVSRTTCQYKLVRVFHEWILNKRLVLAELVEPKFQVYNVGSGLWSGIACVGPFKYEGNAKGAFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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