Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003154`

染色体: Chr02 坐标: 52587306-52592644 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003154`
名称	SmilChr02G003154
描述	uncharacterized SmilChr02G003154
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52587306 - 52592644 / `+`

ID 对照

NCBI Gene ID	`LOC131010149`
GeneID	`131010149`
locus_tag	`-`
NCBI Name	`LOC131010149`
原始查询	`LOC131010149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842835]; symbol=AT1G65280; hit=AT1G65280; species=arabidopsis; confidence=high
产物	DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842835]; symbol=AT1G65280; hit=AT1G65280; species=arabidopsis; confidence=high
Arabidopsis	`AT1G65280` (AT1G65280) DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842835] identity=61.8; qcov=0.872; evalue=0; confidence=high
Rice	`Os01g0521500` (OsDjC8) - identity=60.2; qcov=0.83; evalue=9.08e-180; confidence=high
GO	-
KEGG	-
Pfam	PF00226 (DnaJ); PF12572 (DUF3752)
InterPro	-
eggNOG	-
NR	GeneID:131010149

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793547.1`
2	Nucleoplasm	核质	0.40000	`XP_057793547.1`
3	Nuclear speckle	核斑点	0.20000	`XP_057793547.1`
4	Chromosome	染色体	0.00000	`XP_057793547.1`
5	Centromere	着丝粒	0.00000	`XP_057793547.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52587424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B83,B96
`Chr2:52587498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr2:52587604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B119,B127,B134,C38,C39
`Chr2:52587680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:52587746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B56,B63,C41,D3
`Chr2:52588710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B134,C38
`Chr2:52588795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:52589929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr2:52590368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B124,C5,C83,D5
`Chr2:52590490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C36,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793547.1

588 aa

294

588

DnaJ

DUF3752

PF00226 DnaJ 310-370 aa PF12572 DUF3752 429-579 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793547.1`	Pfam	`PF00226`	DnaJ	Domain	310	370	2e-16	60.5	DnaJ domain
`XP_057793547.1`	Pfam	`PF12572`	DUF3752	Family	429	579	1.6e-30	107.3	Protein of unknown function (DUF3752)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937564.1
GCTTCTAGCCTTCTGCCACCAATCGTAAAGGGGAAGAACATAAATTATTGCAACAAAAAATCCTCTACCAAAAAAAAATTGCAACAGAAATTCGACTGAATTAGTTCAATGGGAAGCCGTTCGAGAAAATCGCGGCACCGGAATTCTTCCCCGGAGCCATCAACGTCCACCGCCGCCACTTCATCGTCATCCGCCTCATCGTCTTCCGAGGAGGAGCTTGATTCTTCGTCTAAGTCGCGCAAACGACGTCTTGACAAGGA...

CDS

1 records

下载 CDS FASTA

LOC131010149
ATGGGAAGCCGTTCGAGAAAATCGCGGCACCGGAATTCTTCCCCGGAGCCATCAACGTCCACCGCCGCCACTTCATCGTCATCCGCCTCATCGTCTTCCGAGGAGGAGCTTGATTCTTCGTCTAAGTCGCGCAAACGACGTCTTGACAAGGACCGTGACCGAGAGGAGAAGCGAAGGAGTAAGAAATCACGAAGAGATGGGGAGAAGAGTAAGAAGAAGAAAAAACACAGCAGAAGAGAAAAAGAGAAGCATAAACGAAG...

Protein

1 records

下载 Protein FASTA

XP_057793547.1
MGSRSRKSRHRNSSPEPSTSTAATSSSSASSSSEEELDSSSKSRKRRLDKDRDREEKRRSKKSRRDGEKSKKKKKHSRREKEKHKRRERRKRRYESEDESGSGSDSEPESPESVVRLILKEFPAVAGDLEQLLQMIDEGQAVDIRGLSEKSLVKHLRRLFISLHLKENGDKIFLLPDKASPTLDIVGPIILSHIQPHKELEHLESHKEAKSVPPVPEMVPGTNNMDDRKDDSVGPRRRVIGPEMPSADLLAAAAKLTEAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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