当前解析结果
SmilChr02G003170| 统一新 Gene ID | SmilChr02G003170 |
|---|---|
| 名称 | SmilChr02G003170 |
| 描述 | ABC transporter G family member 25-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 52716643 - 52723008 / - |
| NCBI Gene ID | LOC131010160 |
|---|---|
| GeneID | 131010160 |
| locus_tag | - |
| NCBI Name | LOC131010160 |
| 原始查询 | LOC131010160 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 25-like |
| 产物 | ABC transporter G family member 25-like |
| Arabidopsis | AT1G71960 (ABCG25)ATP-binding cassette family G25 [Source:NCBI gene (formerly Entrezgene);Acc:843527] identity=63.1; qcov=0.959; evalue=0; confidence=high |
| Rice | Os11g0177400 (OsABCG27)- identity=59.8; qcov=0.711; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF12698 (ABC2_membrane_3); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010160 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793561.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793561.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793561.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793561.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793561.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:52716988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B29,C85,D10 |
Chr2:52717056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B81,B83,B96 |
Chr2:52717128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:52717136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:52717146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr2:52717170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B39,C84 |
Chr2:52717443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr2:52717548 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B59 |
Chr2:52717548 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B59 |
Chr2:52717632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B93,C17,C2,C63 |
Chr2:52717664 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr2:52717711 |
CCA |
C |
2bp_deletion | frameshift_variant | 38 | A15,A20,A24,A25,A7,B105,B107,B117,B118,B18,B24,B38,B47,B6,B73,B85,B86,B91,B98,C10,C11,C14,C19,C22,C28,C31,C33,C40,C41,C48,C53,C58,C61,C63,C78,C81,C87,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793561.1PF00005
ABC_tran 86-238 aa
PF19055
ABC2_membrane_7 267-333 aa
PF01061
ABC2_membrane 389-594 aa
PF12698
ABC2_membrane_3 439-651 aa
PF19055
ABC2_membrane_7 443-561 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793561.1 |
Pfam | PF00005 |
ABC_tran | Domain | 86 | 238 | 7.4e-30 | 105.1 | ABC transporter |
XP_057793561.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 267 | 333 | 8.1e-17 | 61.9 | ABC-2 type transporter |
XP_057793561.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 389 | 594 | 6e-43 | 147.5 | ABC-2 type transporter |
XP_057793561.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 439 | 651 | 3.4e-11 | 43.6 | ABC-2 family transporter protein |
XP_057793561.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 443 | 561 | 8.1e-17 | 61.9 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。