当前解析结果
SmilChr02G003182| 统一新 Gene ID | SmilChr02G003182 |
|---|---|
| 名称 | SmilChr02G003182 |
| 描述 | putative pentatricopeptide repeat-containing protein At1g17630 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 52980938 - 52983321 / - |
| NCBI Gene ID | LOC131010169 |
|---|---|
| GeneID | 131010169 |
| locus_tag | - |
| NCBI Name | LOC131010169 |
| 原始查询 | LOC131010169 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative pentatricopeptide repeat-containing protein At1g17630 |
| 产物 | putative pentatricopeptide repeat-containing protein At1g17630 |
| Arabidopsis | AT1G17630 (AT1G17630)Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838340] identity=45.5; qcov=0.963; evalue=0; confidence=high |
| Rice | Os01g0197450- identity=43.2; qcov=0.828; evalue=1.52e-157; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010169 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057793570.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793570.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793570.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793570.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793570.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:52981091 |
T |
TC |
1bp_insertion | frameshift_variant | 4 | B103,B108,B53,C85 |
Chr2:52981091 |
T |
TC |
1bp_insertion | CDS_variant | 4 | B103,B108,B53,C85 |
Chr2:52981546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:52981547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B82,C1 |
Chr2:52981623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:52981776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B35,B74,C81 |
Chr2:52981955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:52982148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:52982200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B24 |
Chr2:52982382 |
CCA |
C |
2bp_deletion | frameshift_variant | 18 | A2,A22,B101,B136,B33,B35,B40,B49,B66,B70,B82,B84,B89,B9,C48,C68,D3,D5 |
Chr2:52982383 |
C |
T |
EMS_canonical_SNV | stop_gained | 108 | A10,A11,A13,A20,A21,A23,A3,A7,B1,B100,B102,B103,B104,B112,B113,B115,B118,B120,B126,B130,B132,B140,B15,B20,B22,B23,B24,B27,B3,B30,B31,B32,B4,B45,B47,B48,B49,B5,B50,B56,B6,B60,B61,B63,B65,B66,B67,B68,B69,B75,B79,B8,B80,B83,B86,B90,B94,B95,B96,B97,B98,C12,C14,C16,C18,C19,C24,C25,C3,C31,C36,C38,C39,C41,C42,C44,C45,C46,C47,C50,C51,C54,C55,C59,C60,C63,C65,C66,C67,C69,C7,C71,C73,C74,C76,C78,C79,C8,C80,C81,C83,C84,C85,C86,D1,D10,D4,D5 |
Chr2:52982466 |
T |
TC |
1bp_insertion | frameshift_variant | 225 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B110,B112,B113,B114,B115,B117,B118,B12,B120,B121,B124,B125,B126,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B140,B15,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B35,B37,B38,B39,B4,B40,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B70,B71,B75,B76,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C1,C12,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793570.1PF01535
PPR 127-154 aa
PF01535
PPR 226-255 aa
PF01535
PPR 261-291 aa
PF01535
PPR 334-354 aa
PF01535
PPR 362-390 aa
PF01535
PPR 472-497 aa
PF13041
PPR_2 497-545 aa
PF01535
PPR 500-530 aa
PF01535
PPR 535-561 aa
PF01535
PPR 573-597 aa
PF20431
E_motif 615-677 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 127 | 154 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 226 | 255 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 261 | 291 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 334 | 354 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 362 | 390 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 472 | 497 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 497 | 545 | 4.5e-51 | 171.5 | PPR repeat family |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 500 | 530 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 535 | 561 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF01535 |
PPR | Repeat | 573 | 597 | 1.1e-54 | 179.6 | PPR repeat |
XP_057793570.1 |
Pfam | PF20431 |
E_motif | Repeat | 615 | 677 | 3.4e-12 | 47.2 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。