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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003189

染色体: Chr02 坐标: 53050277-53053110 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003189
名称SmilChr02G003189
描述F-box/LRR-repeat/kelch-repeat protein At2g27520-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向53050277 - 53053110 / +

ID 对照

NCBI Gene IDLOC131010176
GeneID131010176
locus_tag-
NCBI NameLOC131010176
原始查询LOC131010176

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述F-box/LRR-repeat/kelch-repeat protein At2g27520-like
产物F-box/LRR-repeat/kelch-repeat protein At2g27520-like
ArabidopsisAT4G04690 (AT4G04690)
F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:825802]
identity=24; qcov=0.735; evalue=3.25e-13; confidence=weak
RiceOs09g0372900 (OsFbox482)
-
identity=26.3; qcov=0.765; evalue=2.02e-16; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro-
eggNOG-
NRGeneID:131010176

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793580.1
2 Cytosol 细胞质基质 0.20000 XP_057793580.1
3 Chromosome 染色体 0.00000 XP_057793580.1
4 Centromere 着丝粒 0.00000 XP_057793580.1
5 Chromatin 染色质 0.00000 XP_057793580.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:53051418 C T EMS_canonical_SNV CDS_variant 1 A18
Chr2:53051451 GC G 1bp_deletion frameshift_variant 1 B136
Chr2:53051451 GC G 1bp_deletion CDS_variant 1 B136
Chr2:53051453 C T EMS_canonical_SNV CDS_variant 3 A21,B29,D10
Chr2:53051456 G A EMS_canonical_SNV CDS_variant 3 A21,B29,D10
Chr2:53051477 G A EMS_canonical_SNV CDS_variant 2 B72,C74
Chr2:53051491 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:53051493 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:53051606 C T EMS_canonical_SNV CDS_variant 3 B53,B71,C45
Chr2:53051646 C T EMS_canonical_SNV CDS_variant 1 B70
Chr2:53051697 G A EMS_canonical_SNV CDS_variant 1 C42
Chr2:53051731 G A EMS_canonical_SNV CDS_variant 4 A3,B60,B82,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793580.1
393 aa
N
1
196
393
F-box
F-box-like
Beta-prop_KIB1-4
FBA_3
FBA_1
C
PF00646 F-box 61-96 aa PF12937 F-box-like 64-96 aa PF03478 Beta-prop_KIB1-4 144-321 aa PF08268 FBA_3 148-322 aa PF07734 FBA_1 154-325 aa
XP_057793581.1
393 aa
N
1
196
393
F-box
F-box-like
Beta-prop_KIB1-4
FBA_3
FBA_1
C
PF00646 F-box 61-96 aa PF12937 F-box-like 64-96 aa PF03478 Beta-prop_KIB1-4 144-321 aa PF08268 FBA_3 148-322 aa PF07734 FBA_1 154-325 aa
XP_057793582.1
392 aa
N
1
196
392
F-box
F-box-like
Beta-prop_KIB1-4
FBA_3
FBA_1
C
PF00646 F-box 61-96 aa PF12937 F-box-like 64-96 aa PF03478 Beta-prop_KIB1-4 144-321 aa PF08268 FBA_3 148-322 aa PF07734 FBA_1 154-325 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793580.1 Pfam PF00646 F-box Domain 61 96 5.3e-07 30.0 F-box domain
XP_057793580.1 Pfam PF12937 F-box-like Domain 64 96 1.4e-06 28.6 F-box-like
XP_057793580.1 Pfam PF03478 Beta-prop_KIB1-4 Repeat 144 321 1e-07 32.5 KIB1-4 beta-propeller
XP_057793580.1 Pfam PF08268 FBA_3 Repeat 148 322 8.6e-15 55.3 F-box associated beta propeller domain
XP_057793580.1 Pfam PF07734 FBA_1 Repeat 154 325 6.9e-12 45.7 F-box associated beta propeller domain
XP_057793581.1 Pfam PF00646 F-box Domain 61 96 5.3e-07 30.0 F-box domain
XP_057793581.1 Pfam PF12937 F-box-like Domain 64 96 1.4e-06 28.6 F-box-like
XP_057793581.1 Pfam PF03478 Beta-prop_KIB1-4 Repeat 144 321 1e-07 32.5 KIB1-4 beta-propeller
XP_057793581.1 Pfam PF08268 FBA_3 Repeat 148 322 8.6e-15 55.3 F-box associated beta propeller domain
XP_057793581.1 Pfam PF07734 FBA_1 Repeat 154 325 6.9e-12 45.7 F-box associated beta propeller domain
XP_057793582.1 Pfam PF00646 F-box Domain 61 96 5.3e-07 30.0 F-box domain
XP_057793582.1 Pfam PF12937 F-box-like Domain 64 96 1.4e-06 28.6 F-box-like
XP_057793582.1 Pfam PF03478 Beta-prop_KIB1-4 Repeat 144 321 1e-07 32.5 KIB1-4 beta-propeller
XP_057793582.1 Pfam PF08268 FBA_3 Repeat 148 322 8.6e-15 55.3 F-box associated beta propeller domain
XP_057793582.1 Pfam PF07734 FBA_1 Repeat 154 325 6.9e-12 45.7 F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057937598.1
TAAAAAGTAATCGAAGTACCTATTTTTATATATTATCATTCCAAATGGAACACTCCAAACTTTTGTGAATTGGGGATTTTCAATTGTAATTCATCTATCAACAATTGAATTTATTTTTTCTTCCCTTTTCTCCATCTTGAATCATAGTTTCGTGAATTTGCAGCTCAAGGATTTTTGCTTTCCAAGAATTTTTCTCTCAGCATTGTTCAGAGCCCTCGAACAATGGATGCCGGCGCGATTCTCCCCAGACGGCGCCTCAT...
XM_057937599.1
AAAGTAATCGAAGTACCTATTTTTATATATTATCATTCCAAATGGAACACTCCAAACTTTTGTGAATTGGGGATTTTCAATTGTAATTCATCTATCAACAATTGAATTTATTTTTTCTTCCCTTTTCTCCATCTTGAATCATAGTTTCGTGAATTTGCAGCTCAAGGATTTTTGCTTTCCAAGAATTTTTCTCTCAGAGCCCTCGAACAATGGATGCCGGCGCGATTCTCCCCAGACGGCGCCTCATAGGCGCAACGTGG...

CDS

3 records

下载 CDS FASTA
LOC131010176
ATGGATGCCGGCGCGATTCTCCCCAGACGGCGCCTCATAGGCGCAACGTGGAGGGAAGCCTTAGCCAGGAAGCAGAGCCGCCTCCTAGCTGAATTTCTCTGGAGAAACTCTGCCCCGATGAAGCCGGCGGAAGAAACGGCATCGCAGGATTCGGAAGCAGAGCTTCACATTCAGACAACACTATCCCCTGATTTGCTCAACCAAATTTTCATGTTGCTCCCTGCTGAATCCCTCTTCAGGCTGCAGTTTGTGTGCAAGCA...
LOC131010176
ATGGATGCCGGCGCGATTCTCCCCAGACGGCGCCTCATAGGCGCAACGTGGAGGGAAGCCTTAGCCAGGAAGCAGAGCCGCCTCCTAGCTGAATTTCTCTGGAGAAACTCTGCCCCGATGAAGCCGGCGGAAGAAACGGCATCGCAGGATTCGGAAGCAGAGCTTCACATTCAGACAACACTATCCCCTGATTTGCTCAACCAAATTTTCATGTTGCTCCCTGCTGAATCCCTCTTCAGGCTGCAGTTTGTGTGCAAGCA...

Protein

3 records

下载 Protein FASTA
XP_057793580.1
MDAGAILPRRRLIGATWREALARKQSRLLAEFLWRNSAPMKPAEETASQDSEAELHIQTTLSPDLLNQIFMLLPAESLFRLQFVCKQWFGLINTPTFVTSHARKSETVLLSQHLAFWPNEGKPKAYFHFLSLDCLSSSFVESSVPDLASVRASYNGLVLASNGRRKRLVLMNPITGKHVELPLGVSSHHLCESFGIAFCSEAKTYKVVHLFREVLGGVGCEILSVDTRKWMRIKGPHESIRVRQMPVSVGGSLHWLASKR...
XP_057793581.1
MDAGAILPRRRLIGATWREALARKQSRLLAEFLWRNSAPMKPAEETASQDSEAELHIQTTLSPDLLNQIFMLLPAESLFRLQFVCKQWFGLINTPTFVTSHARKSETVLLSQHLAFWPNEGKPKAYFHFLSLDCLSSSFVESSVPDLASVRASYNGLVLASNGRRKRLVLMNPITGKHVELPLGVSSHHLCESFGIAFCSEAKTYKVVHLFREVLGGVGCEILSVDTRKWMRIKGPHESIRVRQMPVSVGGSLHWLASKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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