Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003235

染色体: Chr02 坐标: 53633094-53636210 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003235
名称SmilChr02G003235
描述protein NRT1/ PTR FAMILY 5.10-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向53633094 - 53636210 / +

ID 对照

NCBI Gene IDLOC131010222
GeneID131010222
locus_tag-
NCBI NameLOC131010222
原始查询LOC131010222

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein NRT1/ PTR FAMILY 5.10-like
产物protein NRT1/ PTR FAMILY 5.10-like
ArabidopsisAT1G22540 (AT1G22540)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838860]
identity=49.4; qcov=1.04; evalue=3.58e-142; confidence=high
RiceOs01g0871600 (OsPOT)
-
identity=49.4; qcov=0.919; evalue=1.03e-133; confidence=high
GOGO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG-
PfamPF00854 (PTR2); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:131010222

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057793627.1
2 Vacuole 液泡 0.20000 XP_057793627.1
3 Vacuole membrane 液泡膜 0.20000 XP_057793627.1
4 Nucleus 细胞核 0.00000 XP_057793627.1
5 Chromosome 染色体 0.00000 XP_057793627.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:53633527 G A EMS_canonical_SNV CDS_variant 1 B102
Chr2:53633575 C T EMS_canonical_SNV CDS_variant 1 B7
Chr2:53633644 G A EMS_canonical_SNV CDS_variant 1 B7
Chr2:53633668 G A EMS_canonical_SNV CDS_variant 2 A7,C48
Chr2:53634960 G A EMS_canonical_SNV stop_gained 1 C60
Chr2:53634960 G A EMS_canonical_SNV CDS_variant 1 C60
Chr2:53634999 C T EMS_canonical_SNV CDS_variant 4 A5,B124,B27,C25
Chr2:53635519 C T EMS_canonical_SNV CDS_variant 3 A3,B124,D2
Chr2:53635521 G A EMS_canonical_SNV CDS_variant 3 A3,B124,D2
Chr2:53635831 C T EMS_canonical_SNV CDS_variant 3 B65,C40,C71
Chr2:53635837 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:53635864 C T EMS_canonical_SNV CDS_variant 2 B1,B68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057793627.1
511 aa
N
1
256
511
MFS_1
PTR2
PTR2
C
PF07690 MFS_1 49-453 aa PF00854 PTR2 102-255 aa PF00854 PTR2 270-466 aa
XP_057793628.1
419 aa
N
1
210
419
PTR2
PTR2
C
PF00854 PTR2 50-162 aa PF00854 PTR2 177-374 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793627.1 Pfam PF07690 MFS_1 Family 49 453 2.1e-08 34.2 Major Facilitator Superfamily
XP_057793627.1 Pfam PF00854 PTR2 Family 102 255 1.8e-72 245.1 POT family
XP_057793627.1 Pfam PF00854 PTR2 Family 270 466 1.8e-72 245.1 POT family
XP_057793628.1 Pfam PF00854 PTR2 Family 50 162 1.5e-67 229.0 POT family
XP_057793628.1 Pfam PF00854 PTR2 Family 177 374 1.5e-67 229.0 POT family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057937644.1
TTATTACTACTAATAATAAAAAAAATATCTCTCCGCGCTACAAATACTAGACCCACACTAAAATTTTGTGGGAACCAGAAAAAATCTACACCCGCCGAGAAAGTCGTAACCAACGGTCGATCGTTACATACAATAAATGGCTATAATCGCTGCCGGAGAAGTAACGTCGAACGACGTCGTCCCCGGCTACGTCGACTTCAAGGGCCGCCCATCCGTCCGCTCCAAATCCGGTTTCTGGAAATCAGCTTCTTTCATTGCAG...
XM_057937645.1
TTTTGAAATGGCGGAGAGGTTTTGTTACTATGGAATTAGCTCGAATTTGGTGAGTTATTTAACCGGCGAGTTAGGGCAATCCACGGCCGCCGCCGCAGCGAACTTGAATGCATGGTACGGCACGGCGGCGCTCTCGCCGATTCTCGGCGCCCTTCTGGCGGACTCGCTTTTGGGCCGCTTCAGAATGATTGTTTTGTCATCTCTGCTTTATGTATTGTGAGGTGCAAAAATGGTGTAAACAACACCACATTATGCTATCC...

CDS

2 records

下载 CDS FASTA
LOC131010222
ATGGCTATAATCGCTGCCGGAGAAGTAACGTCGAACGACGTCGTCCCCGGCTACGTCGACTTCAAGGGCCGCCCATCCGTCCGCTCCAAATCCGGTTTCTGGAAATCAGCTTCTTTCATTGCAGGTTTTGAAATGGCGGAGAGGTTTTGTTACTATGGAATTAGCTCGAATTTGGTGAGTTATTTAACCGGCGAGTTAGGGCAATCCACGGCCGCCGCCGCAGCGAACTTGAATGCATGGTACGGCACGGCGGCGCTCTC...
LOC131010222
ATGGTACGGCACGGCGGCGCTCTCGCCGATTCTCGGCGCCCTTCTGGCGGACTCGCTTTTGGGCCGCTTCAGAATGATTGTTTTGTCATCTCTGCTTTATGTATTGTGAGGTGCAAAAATGGTGTAAACAACACCACATTATGCTATCCATCTGAGATTCAGACAATTTTCTTCTTCTTGTCACTCTACATGGTTGCATTTGCTCAAGGTGGGCACAAGCCCTGCCTACAAGCATTTGGTGCAGAGCAGTTTGATGTGGG...

Protein

2 records

下载 Protein FASTA
XP_057793627.1
MAIIAAGEVTSNDVVPGYVDFKGRPSVRSKSGFWKSASFIAGFEMAERFCYYGISSNLVSYLTGELGQSTAAAAANLNAWYGTAALSPILGALLADSLLGRFRMIVLSSLLYVLGLGFLTLSSAMNSVRCKNGVNNTTLCYPSEIQTIFFFLSLYMVAFAQGGHKPCLQAFGAEQFDVGNYEENAAKSSFFNWWFWFSCLGVVVALSVVNYIQENLSWVIGFGIPSLVMLFSLLLFCLGSFTYRFTTHTKRDKMFKRHTC...
XP_057793628.1
MVRHGGALADSRRPSGGLAFGPLQNDCFVISALCIVRCKNGVNNTTLCYPSEIQTIFFFLSLYMVAFAQGGHKPCLQAFGAEQFDVGNYEENAAKSSFFNWWFWFSCLGVVVALSVVNYIQENLSWVIGFGIPSLVMLFSLLLFCLGSFTYRFTTHTKRDKMFKRHTCELESLLPVSEEAKTMVRLIPIWCTSLGYSIVYAQPSTLFTKQAFTMDRHIGPSFEIPAASFMLCISLSIMLFVSIYDRVFVPVARSITKKPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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