Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003252`

染色体: Chr02 坐标: 53815197-53818390 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003252`
名称	SmilChr02G003252
描述	patellin-3-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53815197 - 53818390 / `-`

ID 对照

NCBI Gene ID	`LOC131010236`
GeneID	`131010236`
locus_tag	`-`
NCBI Name	`LOC131010236`
原始查询	`LOC131010236`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	patellin-3-like
产物	patellin-3-like
Arabidopsis	`AT4G09160` (AT4G09160) SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Source:NCBI gene (formerly Entrezgene);Acc:826497] identity=70.1; qcov=0.758; evalue=0; confidence=high
Rice	`Os01g0874700` (P0698A10.10-2) - identity=63.7; qcov=0.679; evalue=1.26e-154; confidence=high
GO	GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00650 (CRAL_TRIO); PF03765 (CRAL_TRIO_N); PF25099 (GOLD_PATL1_C)
InterPro	-
eggNOG	-
NR	GeneID:131010236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793642.1`
2	Nucleus	细胞核	0.00000	`XP_057793642.1`
3	Chromosome	染色体	0.00000	`XP_057793642.1`
4	Centromere	着丝粒	0.00000	`XP_057793642.1`
5	Chromatin	染色质	0.00000	`XP_057793642.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53815548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B109,B70,C48
`Chr2:53815585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B54,C15,C26,C44
`Chr2:53815612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B26,B50,C4,C5,C86
`Chr2:53815616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B54,C15,C26,C44
`Chr2:53817250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B126,C32,C69,D8
`Chr2:53817281`	`A`	`AAC`	2bp_insertion	frameshift_variant	59	A11,A15,A3,A4,B107,B11,B113,B119,B120,B126,B14,B140,B15,B17,B19,B22,B32,B35,B37,B38,B4,B43,B47,B5,B50,B56,B72,B89,B92,B96,B99,C1,C13,C14,C17,C20,C23,C27,C30,C32,C36,C37,C39,C41,C42,C45,C49,C50,C53,C59,C61,C65,C74,C84,C86,D1,D10,D8,D9
`Chr2:53817283`	`AGC`	`A`	2bp_deletion	frameshift_variant	146	A1,A11,A15,A2,A20,A21,A25,A3,A4,A5,A7,A8,B1,B10,B100,B103,B107,B108,B11,B113,B115,B117,B119,B120,B126,B128,B129,B13,B130,B131,B133,B134,B136,B138,B14,B140,B15,B17,B18,B19,B2,B20,B22,B24,B29,B3,B30,B31,B32,B35,B36,B37,B38,B4,B41,B42,B43,B46,B47,B48,B5,B50,B52,B53,B54,B55,B56,B62,B65,B66,B67,B7,B71,B72,B73,B75,B76,B78,B79,B80,B83,B89,B91,B92,B94,B95,B96,B97,B99,C1,C11,C13,C14,C16,C17,C20,C21,C23,C25,C26,C27,C29,C30,C32,C34,C36,C37,C39,C4,C41,C42,C45,C47,C49,C5,C50,C51,C53,C56,C59,C6,C61,C62,C64,C65,C68,C69,C72,C73,C74,C75,C76,C78,C79,C83,C84,C86,D1,D10,D2,D3,D4,D5,D6,D8,D9
`Chr2:53817405`	`CT`	`C`	1bp_deletion	frameshift_variant	162	A11,A13,A15,A19,A22,A23,A3,A4,A6,A8,A9,B1,B10,B102,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B118,B119,B12,B120,B122,B124,B126,B127,B13,B132,B134,B137,B14,B140,B15,B17,B18,B19,B2,B21,B22,B23,B24,B25,B27,B28,B29,B30,B32,B35,B37,B38,B4,B41,B42,B43,B45,B47,B49,B5,B50,B51,B52,B53,B54,B55,B56,B58,B59,B63,B67,B7,B70,B71,B72,B73,B76,B77,B79,B80,B82,B83,B85,B86,B89,B9,B92,B95,B96,B97,C1,C10,C12,C13,C14,C17,C18,C20,C21,C22,C23,C24,C25,C27,C29,C3,C31,C32,C33,C35,C36,C37,C38,C39,C4,C40,C41,C42,C45,C46,C47,C49,C5,C50,C51,C53,C56,C59,C6,C61,C62,C63,C64,C65,C66,C68,C7,C70,C72,C73,C74,C78,C79,C80,C83,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D8,D9
`Chr2:53817409`	`G`	`GA`	1bp_insertion	frameshift_variant	159	A11,A13,A15,A19,A22,A23,A3,A4,A6,A8,A9,B1,B10,B102,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B115,B118,B119,B12,B120,B122,B124,B126,B127,B13,B132,B134,B137,B14,B140,B15,B18,B19,B2,B21,B22,B23,B24,B25,B28,B29,B30,B32,B35,B37,B38,B4,B41,B42,B43,B45,B47,B49,B5,B50,B51,B52,B53,B54,B55,B56,B58,B59,B63,B67,B7,B70,B71,B72,B73,B76,B77,B79,B80,B82,B83,B85,B86,B89,B9,B92,B95,B96,B97,C1,C10,C12,C13,C14,C17,C18,C20,C21,C22,C23,C24,C25,C27,C29,C3,C31,C32,C33,C35,C36,C37,C38,C4,C40,C41,C42,C45,C46,C47,C49,C5,C50,C51,C53,C56,C59,C6,C61,C62,C63,C64,C65,C66,C68,C7,C70,C72,C73,C74,C78,C79,C80,C83,C86,C87,C9,D10,D11,D2,D3,D4,D5,D6,D8,D9
`Chr2:53817436`	`CTG`	`C`	2bp_deletion	frameshift_variant	157	A11,A14,A15,A18,A19,A20,A22,A23,A24,A4,A6,A8,A9,B1,B10,B102,B103,B105,B106,B107,B108,B109,B110,B111,B112,B114,B115,B119,B120,B126,B127,B129,B13,B132,B133,B134,B136,B137,B14,B140,B15,B17,B18,B19,B20,B21,B22,B23,B24,B25,B29,B3,B30,B31,B35,B37,B4,B41,B42,B47,B49,B5,B51,B52,B53,B54,B55,B56,B58,B62,B63,B67,B7,B70,B71,B72,B73,B76,B77,B79,B80,B83,B85,B86,B87,B89,B9,B91,B93,B95,B96,B97,C1,C10,C11,C12,C13,C17,C20,C21,C22,C23,C24,C25,C27,C28,C29,C3,C30,C31,C32,C34,C35,C37,C38,C39,C4,C40,C41,C42,C45,C46,C47,C49,C5,C51,C53,C56,C59,C6,C61,C64,C65,C66,C68,C7,C70,C73,C74,C75,C79,C80,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D8,D9
`Chr2:53817439`	`C`	`CAT`	2bp_insertion	frameshift_variant	159	A11,A14,A15,A18,A19,A20,A22,A23,A24,A4,A6,A8,A9,B1,B10,B102,B103,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B115,B118,B119,B120,B126,B127,B129,B13,B132,B133,B134,B136,B137,B14,B140,B15,B17,B18,B19,B20,B21,B22,B23,B24,B25,B29,B3,B30,B31,B35,B37,B4,B41,B42,B47,B49,B5,B51,B52,B53,B54,B55,B56,B58,B62,B63,B67,B7,B70,B71,B72,B73,B76,B77,B79,B80,B83,B85,B86,B87,B89,B9,B91,B93,B95,B96,B97,C1,C10,C11,C12,C13,C17,C20,C21,C22,C23,C24,C25,C27,C28,C29,C3,C30,C31,C32,C34,C35,C37,C38,C39,C4,C40,C41,C42,C45,C46,C47,C49,C5,C51,C53,C56,C59,C6,C61,C64,C65,C66,C68,C7,C70,C73,C74,C75,C79,C80,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D8,D9
`Chr2:53817465`	`TAG`	`T`	2bp_deletion	frameshift_variant	135	A11,A14,A15,A18,A20,A23,A24,A6,A8,A9,B1,B10,B102,B105,B106,B107,B108,B109,B110,B112,B113,B114,B115,B119,B120,B127,B129,B13,B132,B133,B134,B136,B137,B14,B140,B15,B17,B19,B20,B21,B22,B23,B24,B29,B3,B30,B31,B37,B41,B42,B47,B5,B52,B53,B54,B55,B58,B59,B62,B63,B67,B7,B70,B71,B72,B73,B79,B80,B83,B85,B86,B89,B9,B93,B95,B96,B97,C1,C10,C11,C12,C13,C17,C20,C21,C22,C23,C24,C25,C27,C28,C30,C31,C32,C33,C34,C35,C37,C38,C39,C40,C41,C42,C45,C46,C47,C49,C51,C59,C6,C61,C64,C65,C66,C68,C7,C70,C73,C74,C75,C78,C79,C80,C83,C84,C86,D1,D10,D11,D2,D3,D4,D5,D6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793642.1

499 aa

250

499

CRAL_TRIO_N

CRAL_TRIO

GOLD_PATL1_C

PF03765 CRAL_TRIO_N 145-198 aa PF00650 CRAL_TRIO 222-382 aa PF25099 GOLD_PATL1_C 406-490 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793642.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	145	198	5.9e-11	43.1	CRAL/TRIO, N-terminal domain
`XP_057793642.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	222	382	3.5e-32	112.0	CRAL/TRIO domain
`XP_057793642.1`	Pfam	`PF25099`	GOLD_PATL1_C	Domain	406	490	1e-34	118.9	Patellin-1-like, C-terminal GOLD domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937659.1
GCCAAACACGACCTAGAATTGTGTCTGAAGAAAAACCTGAGCAAGAAAAACGTAATTCGTTTTCGCTTCTGTTTTGTCTTCATCTTCCTCATTCTTCTCTCTTCACCAACTCTAGAATTCTCACTCCACTCACACCCCTCAATCTCTCTCTCTCGCTCTCTCTCTCCACAAAATGGCGGAGGAAGCCCACCTAATACATCCACCGGAAGCGGCACAGCCGCCGCCGGCCACGGCTGAGGAAACCCAAACACCACCTCCGC...

CDS

1 records

下载 CDS FASTA

LOC131010236
ATGGCGGAGGAAGCCCACCTAATACATCCACCGGAAGCGGCACAGCCGCCGCCGGCCACGGCTGAGGAAACCCAAACACCACCTCCGCAGCAGTCGGAGCCCATTCCCGAACCGCCGCTAGCATCACTCTCACTAGACGAAGCACCACCCCCCGCCGCCGCCGCCACCGTCGAAGAACACCCGAAAGAATCCCCAGTAACCATCGTCGAAAGAGACTCTCCTCTCCCGCCGCCGCCGCCGGAGTCCCCCACCGCCACCGC...

Protein

1 records

下载 Protein FASTA

XP_057793642.1
MAEEAHLIHPPEAAQPPPATAEETQTPPPQQSEPIPEPPLASLSLDEAPPPAAAATVEEHPKESPVTIVERDSPLPPPPPESPTATATVTLTTTQPLAAALSVPQESEEVTETETKTKPPPQSLGSFKEESNRISDLSQSELKSLHEFKNQIAAAEFGDEASIWGVPLLKDDRSDVVLLKFLRARDFKVKESLSMLKNTLKWRKDFGVDELLKEDLGDDLEKVVFMHGCDKEGHPVCYNVYGEFQNKELYAKTFGDEEKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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