Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003253`

染色体: Chr02 坐标: 53826160-53831016 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003253`
名称	SmilChr02G003253
描述	pheophytinase, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53826160 - 53831016 / `+`

ID 对照

NCBI Gene ID	`LOC131010237`
GeneID	`131010237`
locus_tag	`-`
NCBI Name	`LOC131010237`
原始查询	`LOC131010237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pheophytinase, chloroplastic
产物	pheophytinase%2C chloroplastic
Arabidopsis	`AT5G38520` (AT5G38520) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833840] identity=66.5; qcov=0.853; evalue=2.28e-150; confidence=high
Rice	`Os05g0419000` - identity=72.5; qcov=0.786; evalue=1.73e-156; confidence=high
GO	GO:0009507 (chloroplast); GO:0015994 (chlorophyll metabolic process); GO:0047746 (chlorophyllase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131010237

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793643.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057793643.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057793643.1`
4	Nucleus	细胞核	0.00000	`XP_057793643.1`
5	Chromosome	染色体	0.00000	`XP_057793643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53826732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B87,C46,C50
`Chr2:53826743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B49,B59,B60,B64,B79
`Chr2:53826788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:53829102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr2:53829111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr2:53829134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,C70
`Chr2:53829514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr2:53829627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:53829631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,B73
`Chr2:53829996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:53830006`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B49,B59,B60,B64,B79
`Chr2:53830006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B49,B59,B60,B64,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793643.1

388 aa

194

388

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 117-371 aa PF12146 Hydrolase_4 118-249 aa PF12697 Abhydrolase_6 119-375 aa

XP_057793644.1

388 aa

194

388

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 117-371 aa PF12146 Hydrolase_4 118-249 aa PF12697 Abhydrolase_6 119-375 aa

XP_057793645.1

388 aa

194

388

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 117-371 aa PF12146 Hydrolase_4 118-249 aa PF12697 Abhydrolase_6 119-375 aa

XP_057793646.1

388 aa

194

388

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 117-371 aa PF12146 Hydrolase_4 118-249 aa PF12697 Abhydrolase_6 119-375 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793643.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	117	371	2.9e-24	86.8	alpha/beta hydrolase fold
`XP_057793643.1`	Pfam	`PF12146`	Hydrolase_4	Domain	118	249	4.4e-12	46.5	Serine aminopeptidase, S33
`XP_057793643.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	119	375	3.5e-22	80.8	Alpha/beta hydrolase family
`XP_057793644.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	117	371	2.9e-24	86.8	alpha/beta hydrolase fold
`XP_057793644.1`	Pfam	`PF12146`	Hydrolase_4	Domain	118	249	4.4e-12	46.5	Serine aminopeptidase, S33
`XP_057793644.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	119	375	3.5e-22	80.8	Alpha/beta hydrolase family
`XP_057793645.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	117	371	2.9e-24	86.8	alpha/beta hydrolase fold
`XP_057793645.1`	Pfam	`PF12146`	Hydrolase_4	Domain	118	249	4.4e-12	46.5	Serine aminopeptidase, S33
`XP_057793645.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	119	375	3.5e-22	80.8	Alpha/beta hydrolase family
`XP_057793646.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	117	371	2.9e-24	86.8	alpha/beta hydrolase fold
`XP_057793646.1`	Pfam	`PF12146`	Hydrolase_4	Domain	118	249	4.4e-12	46.5	Serine aminopeptidase, S33
`XP_057793646.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	119	375	3.5e-22	80.8	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009096514.1
TTCCATTTTAATTTCAATTTATTATATTTTAATTTATTTTTTATAAGATTGATCATACTCATGTGGAGTATATAAATGAATTTTTAATTCTTTAGAATTTTTTAAGTTAATAAATTGTTAAGGTTGATTACTTACTTCATAGGATATTATTTTAAGCTTAAAACTCAGTGGCTGTCAGCTCCGAATTTTCTGCCAATTTCTGTGAACACTATTATCTCTTCATAATTTTGGCGGGGACTGTGAATTTTGATGCAATATTT...

XR_009096515.1
TATAAATGAATTTTTAATTCTTTAGAATTTTTTAAGTTAATAAATTGTTAAGGTTGATTACTTACTTCATAGGATATTATTTTAAGCTTAAAACTCAGTGGCTGTCAGCTCCGAATTTTCTGCCAATTTCTGTGAACACTATTATCTCTTCATAATTTTGGCGGGGACTGTGAATTTTGATGCAATATTTCTGCTAGTTAATTGGGGAAAAGAATATTTATTTTTGGTTTGTTATTATGGCCGTTAATCTTGCTGCTAGC...

CDS

4 records

下载 CDS FASTA

LOC131010237
ATGGCCGTTAATCTTGCTGCTAGCCATGTTTTTTTCCTATCATTTTCATCATCGTCGTCGTCATTTGCTCCGCGCCAAATACAGCAGAATCCCAGTTGCAGTTTGGGGAATTTGCTCAAGTTTCCTTCTTCTCGGACAATTCCCAAGAATCCCATTTCCGCCGTAGTGCGTGCTAGCGCAGCTGCAGCGGACGCAGAGGCGGCGGTGGCCACCGGAAAGGAGGAGTCTTTGCCGCCGTTGGAGGTGGGCGAGATTGATAG...

Protein

4 records

下载 Protein FASTA

XP_057793643.1
MAVNLAASHVFFLSFSSSSSSFAPRQIQQNPSCSLGNLLKFPSSRTIPKNPISAVVRASAAAADAEAAVATGKEESLPPLEVGEIDRKCKKWAWRGYAINYFVYPEISSEATADVKPPLLLVHGFGASIAHWRRNIPTLAQSHTVYTIDLLGFGASDKPAGFQYTMEAWSQLILDFLDEVVQKPTVLLGNSVGSLACVIAAAESSQSLVRALVLLNCAGGMNNKAIVDDWRIKLFLPLLWLIDFLLKQRGIASYLFERAR...

XP_057793644.1
MAVNLAASHVFFLSFSSSSSSFAPRQIQQNPSCSLGNLLKFPSSRTIPKNPISAVVRASAAAADAEAAVATGKEESLPPLEVGEIDRKCKKWAWRGYAINYFVYPEISSEATADVKPPLLLVHGFGASIAHWRRNIPTLAQSHTVYTIDLLGFGASDKPAGFQYTMEAWSQLILDFLDEVVQKPTVLLGNSVGSLACVIAAAESSQSLVRALVLLNCAGGMNNKAIVDDWRIKLFLPLLWLIDFLLKQRGIASYLFERAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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