Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003262`

染色体: Chr02 坐标: 53912783-53916969 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003262`
名称	SmilChr02G003262
描述	putative methylesterase 12, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53912783 - 53916969 / `+`

ID 对照

NCBI Gene ID	`LOC131010242`
GeneID	`131010242`
locus_tag	`-`
NCBI Name	`LOC131010242`
原始查询	`LOC131010242`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative methylesterase 12, chloroplastic
产物	putative methylesterase 12%2C chloroplastic
Arabidopsis	`AT4G09900` (MES12) methyl esterase 12 [Source:NCBI gene (formerly Entrezgene);Acc:826580] identity=73.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0110000` - identity=64.8; qcov=1.05; evalue=3.14e-168; confidence=high
GO	GO:0009694 (jasmonic acid metabolic process); GO:0009696 (salicylic acid metabolic process); GO:0080030 (methyl indole-3-acetate esterase activity); GO:0080031 (methyl salicylate esterase activity); GO:0080032 (methyl jasmonate esterase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131010242

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793661.1`
2	Cytoplasm	细胞质	0.20000	`XP_057793661.1`
3	Nucleus	细胞核	0.00000	`XP_057793661.1`
4	Chromosome	染色体	0.00000	`XP_057793661.1`
5	Centromere	着丝粒	0.00000	`XP_057793661.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53914060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B123,C26,C30,C45
`Chr2:53914079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,C30,C45
`Chr2:53914093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:53916165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr2:53916672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B104,B29,B81,C76
`Chr2:53916677`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B94
`Chr2:53916677`	`AC`	`A`	1bp_deletion	CDS_variant	1	B94
`Chr2:53916678`	`CG`	`C`	1bp_deletion	frameshift_variant	9	A1,A13,B117,B131,B132,B9,C27,C53,C67
`Chr2:53916689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B127,B23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793661.1

352 aa

176

352

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 101-209 aa PF00561 Abhydrolase_1 102-336 aa PF12697 Abhydrolase_6 102-338 aa

XP_057793662.1

352 aa

176

352

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 101-209 aa PF00561 Abhydrolase_1 102-336 aa PF12697 Abhydrolase_6 102-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793661.1`	Pfam	`PF12146`	Hydrolase_4	Domain	101	209	1e-07	32.2	Serine aminopeptidase, S33
`XP_057793661.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	102	336	3.7e-13	50.4	alpha/beta hydrolase fold
`XP_057793661.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	102	338	2.2e-20	74.9	Alpha/beta hydrolase family
`XP_057793662.1`	Pfam	`PF12146`	Hydrolase_4	Domain	101	209	1e-07	32.2	Serine aminopeptidase, S33
`XP_057793662.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	102	336	3.7e-13	50.4	alpha/beta hydrolase fold
`XP_057793662.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	102	338	2.2e-20	74.9	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937679.1
AATCATCCTCTTGTCGTACTTCCTGGTCGGTCGCACGCCGAATTCGGTCGGCGACGCCAACTAGCCTCGCCGGAAATCCTAAAAGCAGAGGCGATCATTTGAAAGCAAAGACCTCGGTGTGTGACGATGATTGGTGAGGGATGTCGATTCCAGAGGAAGACCCGACGTTGCTGGATTTTCAGAGTCGCAGTGGCGCAGCAGATTTCTTGACAAGAAGGTGCAAACTTTCGGTTATGTTGAGCTGGTTTTCTGTTTGTCTC...

XM_057937678.1
ATTATACAAACAACCATTAAATTTTAGTCAATTTGTTACTGTAATTTGATTCGCATTCACTGTCACACACAATTTCTTTCGTAAAAATTAAGTGAGGCCTGAAACAGACGGAGCAACGAAAACAGTGAGGAAAGATTTTTTCTTTTCTTTTTTTCTTTAATTTCAATTTATACTGTATTTTTGCAGAGAGAATTGAGTCATAATAGGAGTCCGAACTGAGCTAGAAAACAAAACAGACGTTTGAAAAAAGATTTGTTAAT...

CDS

2 records

下载 CDS FASTA

LOC131010242
ATGGGGAATAAATTCATTTGCATGAGCAAGAAAGATACCAAGAATGGCGGGGTTGGATCAAGAAGCAAAAGGGGCAATCTTTCAAAGAGGAGGAGCTCAATGGAGGAAGAATTGCTGCACAGGCAAGCTCTAGCTATGGCGATTCAGCAGCACCAGCTCTCTCAAAGATTTGATAATGGCTCCATGTCCCGCCGCCTCGGATCCACCTCCTCCCGCCGCCGCGGCGCCAGTTTGTCCGACCCTTTTTCTACCGCTAGTGC...

Protein

2 records

下载 Protein FASTA

XP_057793661.1
MGNKFICMSKKDTKNGGVGSRSKRGNLSKRRSSMEEELLHRQALAMAIQQHQLSQRFDNGSMSRRLGSTSSRRRGASLSDPFSTASAKPLPEFLENIKTKKFVLVHGEGFGAWCWYKSIALLEEYGLLPVALDLTGCGIDTTDAKNVTTLAEYSKPLIDFLQNLPEDEKVILVGHSSGGACISYALEHLPDKISKAVYLCGTMIADGQRPFDVFAEELGSAELFSPDSKSLIYGNGKDNPPTGFMFEKQHLQGLYFNQSP...

XP_057793662.1
MGNKFICMSKKDTKNGGVGSRSKRGNLSKRRSSMEEELLHRQALAMAIQQHQLSQRFDNGSMSRRLGSTSSRRRGASLSDPFSTASAKPLPEFLENIKTKKFVLVHGEGFGAWCWYKSIALLEEYGLLPVALDLTGCGIDTTDAKNVTTLAEYSKPLIDFLQNLPEDEKVILVGHSSGGACISYALEHLPDKISKAVYLCGTMIADGQRPFDVFAEELGSAELFSPDSKSLIYGNGKDNPPTGFMFEKQHLQGLYFNQSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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