Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003264`

染色体: Chr02 坐标: 53920424-53922440 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003264`
名称	SmilChr02G003264
描述	immune-associated nucleotide-binding protein 9-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53920424 - 53922440 / `-`

ID 对照

NCBI Gene ID	`LOC131010248`
GeneID	`131010248`
locus_tag	`-`
NCBI Name	`LOC131010248`
原始查询	`LOC131010248`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	immune-associated nucleotide-binding protein 9-like
产物	immune-associated nucleotide-binding protein 9-like
Arabidopsis	`AT1G33970` (AT1G33970) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840294] identity=48.9; qcov=0.966; evalue=9.09e-86; confidence=high
Rice	`Os02g0557100` - identity=41.2; qcov=0.96; evalue=5.72e-74; confidence=medium
GO	GO:0005525 (GTP binding)
KEGG	-
Pfam	PF01926 (MMR_HSR1); PF04548 (AIG1)
InterPro	-
eggNOG	-
NR	GeneID:131010248

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057793668.1`
2	Lipid droplet	脂滴	0.60000	`XP_057793669.1`
3	Mitochondrion	线粒体	0.40000	`XP_057793669.1`
4	Cytoplasm	细胞质	0.20000	`XP_057793668.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057793669.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53920765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B11,C55,C85
`Chr2:53920927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:53921019`	`C`	`CA`	1bp_insertion	frameshift_variant	8	A4,B104,B131,B29,B81,B82,C1,C76
`Chr2:53921049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr2:53921335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B124,B27,C25,C54
`Chr2:53921420`	`TC`	`T`	1bp_deletion	frameshift_variant	2	A8,B87
`Chr2:53921420`	`TC`	`T`	1bp_deletion	CDS_variant	2	A8,B87
`Chr2:53921608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:53921688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:53921712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:53921815`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B101,C43,D7
`Chr2:53921815`	`CA`	`C`	1bp_deletion	CDS_variant	3	B101,C43,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793668.1

364 aa

182

364

AIG1

MMR_HSR1

PF04548 AIG1 19-226 aa PF01926 MMR_HSR1 20-119 aa

XP_057793669.1

324 aa

162

324

AIG1

MMR_HSR1

PF04548 AIG1 19-226 aa PF01926 MMR_HSR1 20-119 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793668.1`	Pfam	`PF04548`	AIG1	Domain	19	226	5.3e-75	252.1	AIG1 family
`XP_057793668.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	119	7.5e-07	30.0	50S ribosome-binding GTPase
`XP_057793669.1`	Pfam	`PF04548`	AIG1	Domain	19	226	3.8e-75	252.6	AIG1 family
`XP_057793669.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	119	5.7e-07	30.4	50S ribosome-binding GTPase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937686.1
ATTGTATTCTAATAATTTTCATGAACGTAACCATAGCATCTGCATGCTATGGATACTACTAGTACTAGAGATAGATTGAGAGAGAGTCCTCAAAAGAATCAAATGTTGGAAACTGTTCCAAATTGTTATGGAATATGGAAGGTCACTCGTAAAACAGTATCATCATCAATAATTCCACAACGCCAAAGCGTCTCTCCACTTCATCTCTCTTCTCATACAAGCTCCAATTTCATCTGCTTCCAAATCCCTTCACCTCGCAA...

XM_057937685.1
ATTTTCATGAACGTAACCATAGCATCTGCATGCTATGGATACTACTAGTACTAGAGATAGATTGAGAGAGAGTCCTCAAAAGAATCAAATGTTGGAAACTGTTCCAAATTGTTATGGAATATGGAAGGTCACTCGTAAAACAGTATCATCATCAATAATTCCACAACGCCAAAGCGTCTCTCCACTTCATCTCTCTTCTCATACAAGCTCCAATTTCATCTGCTTCCAAATCCCTTCACCTCGCAATGCGTTACACTTGC...

CDS

2 records

下载 CDS FASTA

LOC131010248
ATGCGTTACACTTGCACATCTTCTTCCTGCCGCCGCCGCGGCGATGGAGTTAGAACCCTAGTTTTAGTCGGAAAAGCAGGCAACGGAAAGAGCGCAACGGGCAACAGCATCATTGGCCGCCAGGTGTTCGACTCAATGCCTAGCTTAGCTGGCGTCACTTCTACCTGTCAGCTGCAGACCACCGTGCTAGGCGACGGCCAAATTCTCAACGTCATAGACACTCCTGGTTTGTTTGATTCTTCTGTGGAACATCGCTTGAT...

Protein

2 records

下载 Protein FASTA

XP_057793668.1
MRYTCTSSSCRRRGDGVRTLVLVGKAGNGKSATGNSIIGRQVFDSMPSLAGVTSTCQLQTTVLGDGQILNVIDTPGLFDSSVEHRLMAKEIAQCINLAKDGIHAVLLVLSLRNRFSEEEASAFESLCQIFGGKIADYMIVVFAHGDVLGNNQCLDDFLARSCPKQLMKTLAMCGNRIVLFDNVSEDEVKIFRQREELLSVVEAVVEENGGKQYTNDLFDEVKNSIDQTGEVGCPSKSLALYEEKFERLIEMVMLDFMKRC...

XP_057793669.1
MRYTCTSSSCRRRGDGVRTLVLVGKAGNGKSATGNSIIGRQVFDSMPSLAGVTSTCQLQTTVLGDGQILNVIDTPGLFDSSVEHRLMAKEIAQCINLAKDGIHAVLLVLSLRNRFSEEEASAFESLCQIFGGKIADYMIVVFAHGDVLGNNQCLDDFLARSCPKQLMKTLAMCGNRIVLFDNVSEDEVKIFRQREELLSVVEAVVEENGGKQYTNDLFDEVKNSIDQTGEVGCPSKSLALYEEKFERLIEMVELRLRECI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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