Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003270`

染色体: Chr02 坐标: 53948160-53959116 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003270`
名称	SmilChr02G003270
描述	agamous-like MADS-box protein AGL11
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53948160 - 53959116 / `-`

ID 对照

NCBI Gene ID	`LOC131010255`
GeneID	`131010255`
locus_tag	`-`
NCBI Name	`LOC131010255`
原始查询	`LOC131010255`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL11
产物	agamous-like MADS-box protein AGL11
Arabidopsis	`AT4G09960` (STK) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:826586] identity=64.3; qcov=1.03; evalue=1.2e-99; confidence=high
Rice	`Os01g0201700` (RAG) - identity=58.7; qcov=1.03; evalue=8.86e-92; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131010255

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793674.1`
2	Chromosome	染色体	0.00000	`XP_057793674.1`
3	Centromere	着丝粒	0.00000	`XP_057793674.1`
4	Chromatin	染色质	0.00000	`XP_057793674.1`
5	Telomere	端粒	0.00000	`XP_057793674.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53949211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:53954737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B127,B23
`Chr2:53955126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B50,C75
`Chr2:53955134`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B13,B50,C75
`Chr2:53955134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B50,C75
`Chr2:53955147`	`CAG`	`C`	2bp_deletion	frameshift_variant	3	B13,C12,C23
`Chr2:53955147`	`CAG`	`C`	2bp_deletion	CDS_variant	3	B13,C12,C23
`Chr2:53955289`	`G`	`GGT`	2bp_insertion	frameshift_variant	15	B110,B24,B33,B38,B78,B82,C12,C23,C31,C42,C58,C75,C78,D1,D7
`Chr2:53958060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:53958133`	`A`	`AG`	1bp_insertion	frameshift_variant	14	A1,A10,B127,B132,B137,B21,B22,B26,B53,B6,C13,C40,C67,D7
`Chr2:53958150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr2:53958177`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793674.1

224 aa

112

224

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-172 aa

XP_057793675.1

224 aa

112

224

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-172 aa

XP_057793676.1

224 aa

112

224

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-172 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793674.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	3.9e-27	94.2	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057793674.1`	Pfam	`PF01486`	K-box	Family	84	172	5.4e-28	97.7	K-box region
`XP_057793675.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	3.9e-27	94.2	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057793675.1`	Pfam	`PF01486`	K-box	Family	84	172	5.4e-28	97.7	K-box region
`XP_057793676.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	3.9e-27	94.2	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057793676.1`	Pfam	`PF01486`	K-box	Family	84	172	5.4e-28	97.7	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937693.1
TAGACAGACGTATATGCCAACCTAGGAGCTAAAGCGAAACATGTACAAAGAAAGAAAGAGGTATATATGTATGATGATTTCATTGAAGAGGCCGAGTTAAAGAGGTCTTTTTTCAAGGGATTGTTTGGAATTCGTGTAAGCTTTCGCCAAAGCAAAATTGTCGCCGGAAAATAGCAAAATTTTCCCAGATGTTTTTTTCCCTTGAATTCTGGGGAGCTAGGGTTCTTCAGAGATGGGAAGGGGCAAGATCGAGATAAAGA...

XM_057937691.1
ACAGACGTATATGCCAACCTAGGAGCTAAAGCGAAACATGTACAAAGAAAGAAAGAGGTATATATGTATGATGATTTCATTGAAGAGGCCGAGTTAAAGAGGTCTTTTTTCAAGGGATTGTTTGGAATTCGTGTAAGCTTTCGCCAAAGCAAAATTGTCGCCGGAAAATAGCAAAATTTTCCCAGGGTTCTTCAGAGATGGGAAGGGGCAAGATCGAGATAAAGAGGATCGAGAACAACACGAATCGACAGGTGACCTTC...

CDS

3 records

下载 CDS FASTA

LOC131010255
ATGGGAAGGGGCAAGATCGAGATAAAGAGGATCGAGAACAACACGAATCGACAGGTGACCTTCTGCAAGCGCAGGAATGGATTATTGAAGAAGGCTTATGAACTCTCCATTCTCTGCGATGCAGAAGTTGCTCTCATCGTCTTCTCCAGCCGCGGCCGCGTCTATGAATATGCCAACAACAACATTAGATCAACTATTGAGAGATACAAGAAATCAACTACAGATAGCTCAAATGCTTGCACCACTCAAGAAATCAATGC...

Protein

3 records

下载 Protein FASTA

XP_057793674.1
MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRVYEYANNNIRSTIERYKKSTTDSSNACTTQEINAQFYQQESKKLRQQIQMLQNSNRHLMGEGLSSLNVKELKQLESRLERGITRIRGKKHELILAETECLQKREAQLEQENACLRAKIQENEKLQQLSMMPSGQDFAFQAYYARNMLQLNMMESATVYAAPSDKKTVHLGY

XP_057793675.1
MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRVYEYANNNIRSTIERYKKSTTDSSNACTTQEINAQFYQQESKKLRQQIQMLQNSNRHLMGEGLSSLNVKELKQLESRLERGITRIRGKKHELILAETECLQKREAQLEQENACLRAKIQENEKLQQLSMMPSGQDFAFQAYYARNMLQLNMMESATVYAAPSDKKTVHLGY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器