当前解析结果
SmilChr02G003283| 统一新 Gene ID | SmilChr02G003283 |
|---|---|
| 名称 | SmilChr02G003283 |
| 描述 | GDSL esterase/lipase At1g71691 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54136917 - 54140515 / + |
| NCBI Gene ID | LOC131010264 |
|---|---|
| GeneID | 131010264 |
| locus_tag | - |
| NCBI Name | LOC131010264 |
| 原始查询 | LOC131010264 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GDSL esterase/lipase At1g71691 |
| 产物 | GDSL esterase/lipase At1g71691 |
| Arabidopsis | AT1G71691 (AT1G71691)GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843496] identity=69.1; qcov=0.902; evalue=2.99e-173; confidence=high |
| Rice | Os05g0419800 (OsGELP67)- identity=67.4; qcov=0.889; evalue=1.44e-159; confidence=high |
| GO | GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | - |
| Pfam | PF00657 (Lipase_GDSL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010264 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057793695.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793695.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793695.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793695.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793695.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54137030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C74 |
Chr2:54137055 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A5,B124,B27,C34 |
Chr2:54137055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B124,B27,C34 |
Chr2:54139565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B62 |
Chr2:54139599 |
AC |
A |
1bp_deletion | frameshift_variant | 8 | B105,B115,B33,B34,B61,C55,C77,C85 |
Chr2:54139610 |
CG |
C |
1bp_deletion | frameshift_variant | 7 | B105,B115,B33,B34,B61,C55,C85 |
Chr2:54139664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:54139688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:54139726 |
A |
AT |
1bp_insertion | frameshift_variant | 14 | A14,A2,A24,B108,B115,B20,B25,B28,B62,B7,C12,C48,C64,C85 |
Chr2:54139727 |
CGG |
C |
2bp_deletion | frameshift_variant | 14 | A14,A2,A24,B108,B115,B20,B25,B28,B62,B7,C12,C48,C64,C85 |
Chr2:54139730 |
C |
CT |
1bp_insertion | frameshift_variant | 14 | A14,A2,A24,B108,B115,B20,B25,B28,B62,B7,C12,C48,C64,C85 |
Chr2:54139759 |
AGT |
A |
2bp_deletion | frameshift_variant | 12 | A14,A2,A24,B115,B20,B25,B28,B61,B62,B7,C12,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793695.1PF00657
Lipase_GDSL 44-348 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793695.1 |
Pfam | PF00657 |
Lipase_GDSL | Family | 44 | 348 | 1.4e-33 | 117.5 | GDSL-like Lipase/Acylhydrolase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。