Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003308`

染色体: Chr02 坐标: 54342393-54345281 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003308`
名称	SmilChr02G003308
描述	uncharacterized SmilChr02G003308
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54342393 - 54345281 / `-`

ID 对照

NCBI Gene ID	`LOC131010288`
GeneID	`131010288`
locus_tag	`-`
NCBI Name	`LOC131010288`
原始查询	`LOC131010288`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nuclear transport factor 2 (NTF2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:843489]; symbol=AT1G71480; hit=AT1G71480; species=arabidopsis; confidence=high
产物	Nuclear transport factor 2 (NTF2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:843489]; symbol=AT1G71480; hit=AT1G71480; species=arabidopsis; confidence=high
Arabidopsis	`AT1G71480` (AT1G71480) Nuclear transport factor 2 (NTF2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:843489] identity=63.1; qcov=0.751; evalue=3.83e-66; confidence=high
Rice	`Os09g0266000` (B1012G11.37-1) - identity=63.2; qcov=0.689; evalue=4.63e-59; confidence=high
GO	-
KEGG	-
Pfam	PF02136 (NTF2); PF07366 (SnoaL); PF12680 (SnoaL_2)
InterPro	-
eggNOG	-
NR	GeneID:131010288

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793722.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057793722.1`
3	Chloroplast thylakoid	类囊体	0.40000	`XP_057793722.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057793722.1`
5	Nucleus	细胞核	0.00000	`XP_057793723.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54344693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,B99
`Chr2:54344816`	`G`	`GT`	1bp_insertion	frameshift_variant	1	A21
`Chr2:54344816`	`G`	`GT`	1bp_insertion	CDS_variant	1	A21
`Chr2:54344830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr2:54344962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B95,C14,C83
`Chr2:54344995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A19,B112,B25,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793722.1

225 aa

112

225

NTF2

SnoaL

SnoaL_2

PF02136 NTF2 81-185 aa PF07366 SnoaL 84-158 aa PF12680 SnoaL_2 84-178 aa

XP_057793723.1

209 aa

104

209

NTF2

SnoaL

SnoaL_2

PF02136 NTF2 81-185 aa PF07366 SnoaL 84-158 aa PF12680 SnoaL_2 84-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793722.1`	Pfam	`PF02136`	NTF2	Domain	81	185	5.5e-12	46.9	Nuclear transport factor 2 (NTF2) domain
`XP_057793722.1`	Pfam	`PF07366`	SnoaL	Domain	84	158	2e-07	31.6	SnoaL-like polyketide cyclase
`XP_057793722.1`	Pfam	`PF12680`	SnoaL_2	Domain	84	178	1.2e-14	55.4	SnoaL-like domain
`XP_057793723.1`	Pfam	`PF02136`	NTF2	Domain	81	185	4.6e-12	47.1	Nuclear transport factor 2 (NTF2) domain
`XP_057793723.1`	Pfam	`PF07366`	SnoaL	Domain	84	158	1.7e-07	31.8	SnoaL-like polyketide cyclase
`XP_057793723.1`	Pfam	`PF12680`	SnoaL_2	Domain	84	178	1e-14	55.6	SnoaL-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937739.1
CCTAGTCTAAATTCCACTCGAATTTATCAAGTCAAGATATTCAAAAGAATGATCCAAATTTCCCTCCATATCACCTAAACAATTTGTGTGGAATTCAGACTGCTACTTCACTTTTGAAATACAAATACATTCCAATATTTCAAAGTCGAACGTGTGTGTTAAAAGTGTAAATTAATCAAAATTACGGGTGTACACATGTAATAGTAGTAATATCTTGAAGCAGCTAGCTCTGAGCTGATACCAAAATGATTCGCTCAATA...

XM_057937740.1
CCTAGTCTAAATTCCACTCGAATTTATCAAGTCAAGATATTCAAAAGAATGATCCAAATTTCCCTCCATATCACCTAAACAATTTGTGTGGAATTCAGACTGCTACTTCACTTTTGAAATACAAATACATTCCAATATTTCAAAGTCGAACGTGTGTGTTAAAAGTGTAAATTAATCAAAATTACGGGTGTACACATGTAATAGTAGTAATATCTTGAAGCAGCTAGCTCTGAGCTGATACCAAAATGATTCGCTCAATA...

CDS

2 records

下载 CDS FASTA

LOC131010288
ATGATTCGCTCAATACCAACCGTCTCTTCTTATCTATCTCACCTCCAAACTGACTACGTCCAAACTTCCGCCATCACTGCTGTTTCCAGCTGCTACACGTCTCCGAGAGACACGATTTCACGCGTTTATGCAAGCGCCGCTCTTTCCGCCGGCAGCGGAGGTATCAGCCGTCCGGTGCGTCGCCGGAGCACCCCGACGGCGACGGAGGCGACTTCCACCACCGTTGAGCTAGATTCCGCGGCAGGCACCGTCAGGAAGTT...

Protein

2 records

下载 Protein FASTA

XP_057793722.1
MIRSIPTVSSYLSHLQTDYVQTSAITAVSSCYTSPRDTISRVYASAALSAGSGGISRPVRRRSTPTATEATSTTVELDSAAGTVRKFYDGINRRDLASVEDLIALNCVYEDLIFSQPFTGREAILDFFKQFIDSISGDLQFAIDEISEEDTSAVGVTWHLEWKGKPFPFSRGCSFYQLDVINGQRQIVFGRDAVEPAIKPGETALVAIRGVTWLLQNFPFLGDRL

XP_057793723.1
MIRSIPTVSSYLSHLQTDYVQTSAITAVSSCYTSPRDTISRVYASAALSAGSGGISRPVRRRSTPTATEATSTTVELDSAAGTVRKFYDGINRRDLASVEDLIALNCVYEDLIFSQPFTGREAILDFFKQFIDSISGDLQFAIDEISEEDTSAVGVTWHLEWKGKPFPFSRGCSFYQLDVINGQRQIVFGRDAVEPAIKPGETALATFS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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