Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003317`

染色体: Chr02 坐标: 54442745-54446710 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003317`
名称	SmilChr02G003317
描述	transcription factor bHLH25-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54442745 - 54446710 / `-`

ID 对照

NCBI Gene ID	`LOC131010296`
GeneID	`131010296`
locus_tag	`-`
NCBI Name	`LOC131010296`
原始查询	`LOC131010296`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor bHLH25-like
产物	transcription factor bHLH25-like
Arabidopsis	`AT4G37850` (AT4G37850) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829941] identity=38.9; qcov=0.869; evalue=1.45e-36; confidence=medium
Rice	`Os03g0725800` (OsbHLH018) - identity=44.7; qcov=0.84; evalue=3.6e-41; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH); PF22754 (bHLH-TF_ACT-like_plant)
InterPro	-
eggNOG	-
NR	GeneID:131010296

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793731.1`
2	Chromosome	染色体	0.00000	`XP_057793731.1`
3	Centromere	着丝粒	0.00000	`XP_057793731.1`
4	Chromatin	染色质	0.00000	`XP_057793731.1`
5	Telomere	端粒	0.00000	`XP_057793731.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54443397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:54445042`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B139,B4,B97,C4
`Chr2:54445102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr2:54445148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C1
`Chr2:54445653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:54445719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793731.1

266 aa

133

266

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 106-152 aa PF22754 bHLH-TF_ACT-like_plant 190-257 aa

XP_057793732.1

266 aa

133

266

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 106-152 aa PF22754 bHLH-TF_ACT-like_plant 190-257 aa

XP_057793733.1

246 aa

123

246

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 106-152 aa PF22754 bHLH-TF_ACT-like_plant 190-236 aa

XP_057793734.1

246 aa

123

246

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 106-152 aa PF22754 bHLH-TF_ACT-like_plant 190-236 aa

XP_057793735.1

213 aa

106

213

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 53-99 aa PF22754 bHLH-TF_ACT-like_plant 137-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793731.1`	Pfam	`PF00010`	HLH	Domain	106	152	5.5e-09	36.4	Helix-loop-helix DNA-binding domain
`XP_057793731.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	190	257	1.7e-05	25.5	Plant bHLH transcription factor, ACT-like domain
`XP_057793732.1`	Pfam	`PF00010`	HLH	Domain	106	152	5.5e-09	36.4	Helix-loop-helix DNA-binding domain
`XP_057793732.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	190	257	1.7e-05	25.5	Plant bHLH transcription factor, ACT-like domain
`XP_057793733.1`	Pfam	`PF00010`	HLH	Domain	106	152	5e-09	36.6	Helix-loop-helix DNA-binding domain
`XP_057793733.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	190	236	9.4e-05	23.2	Plant bHLH transcription factor, ACT-like domain
`XP_057793734.1`	Pfam	`PF00010`	HLH	Domain	106	152	5e-09	36.6	Helix-loop-helix DNA-binding domain
`XP_057793734.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	190	236	9.4e-05	23.2	Plant bHLH transcription factor, ACT-like domain
`XP_057793735.1`	Pfam	`PF00010`	HLH	Domain	53	99	3.7e-09	37.0	Helix-loop-helix DNA-binding domain
`XP_057793735.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	137	204	1.1e-05	26.2	Plant bHLH transcription factor, ACT-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009096527.1
CAGGTTTATTCGTACACAGCCAAAGAATATATTTTCCGACAATTTTTGGAGAGTTAAGCCAACACAAAATTTAGTCCTAAATTTTGTTGCAGAGTTTGTACACATATCCAACATCTTATTCCTCTCTCTCGATAGAGAATATCCATCTTCCGCGAGGTTATGGAATATTATGATGAGATCTTTGATCTGAAGCCAATTTTCCCAGAGATCCACTCGAATGGAAGAAGCATCAATTCCGACAACAACAACAATTCTTCATC...

XM_057937750.1
CAGGTTTATTCGTACACAGCCAAAGAATATATTTTCCGACAATTTTTGGAGAGTTAAGCCAACACAAAATTTAGTCCTAAATTTTGTTGCAGAGTTTGTACACATATCCAACATCTTATTCCTCTCTCTCGATAGAGAATATCCATCTTCCGCGAGGTTATGGAATATTATGATGAGATCTTTGATCTGAAGCCAATTTTCCCAGAGATCCACTCGAATGGAAGAAGCATCAATTCCGACAACAACAACAATTCTTCATC...

CDS

5 records

下载 CDS FASTA

LOC131010296
ATGGAATATTATGATGAGATCTTTGATCTGAAGCCAATTTTCCCAGAGATCCACTCGAATGGAAGAAGCATCAATTCCGACAACAACAACAATTCTTCATCAAATTCCACTGCAGCAGCCCCAAAATTGCTCTCTTTTGAGAGCTCAAATTCACCACAAATGGATCAAAGCTCCCTAAATGTTGACTACTCTGTAACCTCCGAAATCATAAATTTCTCGTCTTCTACAAAGGATGATTACAGCAGCAACAACGAATACTA...

Protein

5 records

下载 Protein FASTA

XP_057793731.1
MEYYDEIFDLKPIFPEIHSNGRSINSDNNNNSSSNSTAAAPKLLSFESSNSPQMDQSSLNVDYSVTSEIINFSSSTKDDYSSNNEYYPQKRINSCAAARTPSQAMDHVVAERKRRENLSQLFISLSKVVPGLKKLDKASLLEDGINYVKAMQERVRVLEEEEERRNAAVKEDSSSSYSGGESEGPEIHARISDKHVLIKMFCKNKMGLMSRIPSEMMDIMHLNVVDMRIMPFGGTALDITILAEMQREFEGTAKDIVEHL...

XP_057793732.1
MEYYDEIFDLKPIFPEIHSNGRSINSDNNNNSSSNSTAAAPKLLSFESSNSPQMDQSSLNVDYSVTSEIINFSSSTKDDYSSNNEYYPQKRINSCAAARTPSQAMDHVVAERKRRENLSQLFISLSKVVPGLKKLDKASLLEDGINYVKAMQERVRVLEEEEERRNAAVKEDSSSSYSGGESEGPEIHARISDKHVLIKMFCKNKMGLMSRIPSEMMDIMHLNVVDMRIMPFGGTALDITILAEMQREFEGTAKDIVEHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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