当前解析结果
SmilChr02G003394| 统一新 Gene ID | SmilChr02G003394 |
|---|---|
| 名称 | SmilChr02G003394 |
| 描述 | kinesin-like protein KIN-7E |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55047713 - 55052560 / - |
| NCBI Gene ID | LOC131010308 |
|---|---|
| GeneID | 131010308 |
| locus_tag | - |
| NCBI Name | LOC131010308 |
| 原始查询 | LOC131010308 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-7E |
| 产物 | kinesin-like protein KIN-7E |
| Arabidopsis | AT2G21300 (AT2G21300)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:816669] identity=58; qcov=0.484; evalue=0; confidence=medium |
| Rice | Os04g0538800 (KIN7F)- identity=61.3; qcov=0.473; evalue=0; confidence=medium |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010308 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057793748.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057793748.1 |
| 3 | Spindle pole | Spindle pole | 0.80000 | XP_057793748.1 |
| 4 | Phragmoplast | Phragmoplast | 0.60000 | XP_057793748.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057793748.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55047942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B93,C2 |
Chr2:55048083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B82,C1,C41 |
Chr2:55048115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B107,C83 |
Chr2:55048128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B107,C83 |
Chr2:55048134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B107,C83 |
Chr2:55048202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr2:55048700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:55048901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr2:55049009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr2:55049280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,B94 |
Chr2:55049340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:55049465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793748.1PF16796
Microtub_bd 21-158 aa
PF00225
Kinesin 27-343 aa
PF11995
DUF3490 870-1021 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793748.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 21 | 158 | 1.2e-22 | 81.2 | Microtubule binding |
XP_057793748.1 |
Pfam | PF00225 |
Kinesin | Domain | 27 | 343 | 1.2e-101 | 340.7 | Kinesin motor domain |
XP_057793748.1 |
Pfam | PF11995 |
DUF3490 | Family | 870 | 1021 | 3.6e-65 | 219.3 | Domain of unknown function (DUF3490) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。