Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003394

染色体: Chr02 坐标: 55047713-55052560 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003394
名称SmilChr02G003394
描述kinesin-like protein KIN-7E
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向55047713 - 55052560 / -

ID 对照

NCBI Gene IDLOC131010308
GeneID131010308
locus_tag-
NCBI NameLOC131010308
原始查询LOC131010308

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-7E
产物kinesin-like protein KIN-7E
ArabidopsisAT2G21300 (AT2G21300)
ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:816669]
identity=58; qcov=0.484; evalue=0; confidence=medium
RiceOs04g0538800 (KIN7F)
-
identity=61.3; qcov=0.473; evalue=0; confidence=medium
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGGsmil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
PfamPF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:131010308

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057793748.1
2 Spindle Spindle 1.00000 XP_057793748.1
3 Spindle pole Spindle pole 0.80000 XP_057793748.1
4 Phragmoplast Phragmoplast 0.60000 XP_057793748.1
5 Chromosome 染色体 0.20000 XP_057793748.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:55047942 G A EMS_canonical_SNV CDS_variant 3 B26,B93,C2
Chr2:55048083 C T EMS_canonical_SNV CDS_variant 3 B82,C1,C41
Chr2:55048115 G A EMS_canonical_SNV CDS_variant 3 B104,B107,C83
Chr2:55048128 C T EMS_canonical_SNV CDS_variant 3 B104,B107,C83
Chr2:55048134 C T EMS_canonical_SNV CDS_variant 3 B104,B107,C83
Chr2:55048202 G A EMS_canonical_SNV CDS_variant 1 C78
Chr2:55048700 G A EMS_canonical_SNV CDS_variant 1 A21
Chr2:55048901 C T EMS_canonical_SNV CDS_variant 1 C83
Chr2:55049009 G A EMS_canonical_SNV CDS_variant 1 C50
Chr2:55049280 G A EMS_canonical_SNV CDS_variant 2 B80,B94
Chr2:55049340 C T EMS_canonical_SNV CDS_variant 1 B64
Chr2:55049465 G A EMS_canonical_SNV CDS_variant 1 D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057793748.1
1039 aa
N
1
520
1039
Microtub_bd
Kinesin
DUF3490
C
PF16796 Microtub_bd 21-158 aa PF00225 Kinesin 27-343 aa PF11995 DUF3490 870-1021 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793748.1 Pfam PF16796 Microtub_bd Domain 21 158 1.2e-22 81.2 Microtubule binding
XP_057793748.1 Pfam PF00225 Kinesin Domain 27 343 1.2e-101 340.7 Kinesin motor domain
XP_057793748.1 Pfam PF11995 DUF3490 Family 870 1021 3.6e-65 219.3 Domain of unknown function (DUF3490)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937765.1
TCCTCATTCTCTTTTTTGTGTATGTGTTCGTTTCTCCAACCCTACAATGGGTTATAGTTTCATCTTGCATATACCATATTAATTAATTTCTCAGTTTAGGAAAATCTAAGCCTGCGATTTCCAGAACATAATCAATCCACAATTTCATATATATCTACATCTACATATAAGATAAAGGAGAGCAGAGGCTTAACGTAAAAGGTGGGGACATAAGTCCCTCTCTTTGTTAAAAAGAGAGGGCAGAGGGCAGCTTCTTGAGG...

CDS

1 records

下载 CDS FASTA
LOC131010308
ATGGCATCGGTTTGTGGAGATGAGATGGTGGAATGGGAGAATGCAAGTGCACATGAGGAGAAAATCTATGTTGCAGTGAGGGTTAGGCCTCTGAGTGATAGGGAAATCTCAAAGAATGATTTGTCGGATTGGGAGTGCATCAACAACACCACCATCATTTTCAAGAACACTCTTCAAGAACGTTCTCAACTTCCCAGTGCCTACACCTTCGATAGAGTTTTTGGGGTTAACTCTCCAACAAAGCATGTCTACGAGGAAGC...

Protein

1 records

下载 Protein FASTA
XP_057793748.1
MASVCGDEMVEWENASAHEEKIYVAVRVRPLSDREISKNDLSDWECINNTTIIFKNTLQERSQLPSAYTFDRVFGVNSPTKHVYEEAAKKIALSVLSGINSTIFAYGQTGSGKTFTMCGITECAIADIYDYIHKHHERNFVLKFSAMEIYNEAVRDLLQSDGTPLRLLDDPERGTIVDKLTEVTLKDSHQLRELLSICEAQRRIGETNLNELSSRSHQILRLTVESEAVQYMGVPSSSTLTASVNFVDLAGSERASQTNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器