当前解析结果
SmilChr02G003344| 统一新 Gene ID | SmilChr02G003344 |
|---|---|
| 名称 | SmilChr02G003344 |
| 描述 | sucrose-phosphate synthase 4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54666264 - 54672497 / + |
| NCBI Gene ID | LOC131010309 |
|---|---|
| GeneID | 131010309 |
| locus_tag | - |
| NCBI Name | LOC131010309 |
| 原始查询 | LOC131010309 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sucrose-phosphate synthase 4 |
| 产物 | sucrose-phosphate synthase 4 |
| Arabidopsis | AT4G10120 (ATSPS4F)Sucrose-phosphate synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826603] identity=66.5; qcov=0.988; evalue=0; confidence=high |
| Rice | Os01g0919400 (SPS1)- identity=56.6; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity); GO:0046524 (sucrose-phosphate synthase activity) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF05116 (S6PP); PF13579 (Glyco_trans_4_4); PF13692 (Glyco_trans_1_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010309 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057793749.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057793749.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057793749.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057793749.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057793749.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54668131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:54668579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B37,C26,C87,D3 |
Chr2:54668621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:54668627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:54668654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr2:54669040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C28 |
Chr2:54669049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B64 |
Chr2:54669117 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:54669122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B107 |
Chr2:54669392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B107 |
Chr2:54669463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:54669689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793749.1PF00862
GT-B_Sucrose_synth 190-450 aa
PF13579
Glyco_trans_4_4 214-407 aa
PF00534
Glycos_transf_1 491-664 aa
PF13692
Glyco_trans_1_4 495-652 aa
PF05116
S6PP 802-986 aa
XP_057793750.1PF00862
GT-B_Sucrose_synth 190-450 aa
PF13579
Glyco_trans_4_4 214-407 aa
PF00534
Glycos_transf_1 491-664 aa
PF13692
Glyco_trans_1_4 495-652 aa
PF05116
S6PP 802-986 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793749.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 190 | 450 | 2.8e-11 | 43.5 | Sucrose synthase first GT-B domain |
XP_057793749.1 |
Pfam | PF13579 |
Glyco_trans_4_4 | Domain | 214 | 407 | 2.3e-09 | 38.5 | Glycosyl transferase 4-like domain |
XP_057793749.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 491 | 664 | 1.1e-25 | 90.9 | Glycosyl transferases group 1 |
XP_057793749.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 495 | 652 | 3.4e-16 | 60.5 | Glycosyl transferases group 1 |
XP_057793749.1 |
Pfam | PF05116 |
S6PP | Family | 802 | 986 | 3.7e-22 | 79.9 | Sucrose-6F-phosphate phosphohydrolase |
XP_057793750.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 190 | 450 | 2.8e-11 | 43.5 | Sucrose synthase first GT-B domain |
XP_057793750.1 |
Pfam | PF13579 |
Glyco_trans_4_4 | Domain | 214 | 407 | 2.3e-09 | 38.5 | Glycosyl transferase 4-like domain |
XP_057793750.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 491 | 664 | 1.1e-25 | 90.9 | Glycosyl transferases group 1 |
XP_057793750.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 495 | 652 | 3.4e-16 | 60.5 | Glycosyl transferases group 1 |
XP_057793750.1 |
Pfam | PF05116 |
S6PP | Family | 802 | 986 | 3.7e-22 | 79.9 | Sucrose-6F-phosphate phosphohydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。