Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003413`

染色体: Chr02 坐标: 55292135-55304907 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003413`
名称	SmilChr02G003413
描述	probable dipeptidyl-peptidase 5
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55292135 - 55304907 / `-`

ID 对照

NCBI Gene ID	`LOC131010318`
GeneID	`131010318`
locus_tag	`-`
NCBI Name	`LOC131010318`
原始查询	`LOC131010318`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable dipeptidyl-peptidase 5
产物	probable dipeptidyl-peptidase 5
Arabidopsis	`AT5G36210` (AT5G36210) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833618] identity=70.1; qcov=0.936; evalue=0; confidence=high
Rice	`Os06g0215300` (OsPOP12) - identity=67.8; qcov=0.93; evalue=0; confidence=high
GO	GO:0006508 (proteolysis); GO:0008236 (serine-type peptidase activity)
KEGG	-
Pfam	PF00326 (Peptidase_S9); PF01738 (DLH); PF07859 (Abhydrolase_3); PF20434 (BD-FAE)
InterPro	-
eggNOG	-
NR	GeneID:131010318

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793763.1`
2	Cytoplasm	细胞质	0.20000	`XP_057793763.1`
3	Chloroplast	叶绿体	0.20000	`XP_057793763.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057793763.1`
5	Nucleus	细胞核	0.00000	`XP_057793763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55292443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:55292459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B31,C64,C66
`Chr2:55292507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:55292622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:55292785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:55292807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B49,C12,C58
`Chr2:55292989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:55294477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B20,C82
`Chr2:55294720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B5,B64,C27,C49,D4
`Chr2:55294735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:55295765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:55295783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B34,C16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793763.1

719 aa

360

719

Peptidase_S9

BD-FAE

Abhydrolase_3

DLH

PF00326 Peptidase_S9 503-702 aa PF20434 BD-FAE 542-661 aa PF07859 Abhydrolase_3 542-680 aa PF01738 DLH 553-686 aa

XP_057793764.1

718 aa

359

718

Peptidase_S9

BD-FAE

Abhydrolase_3

DLH

PF00326 Peptidase_S9 502-701 aa PF20434 BD-FAE 541-660 aa PF07859 Abhydrolase_3 541-679 aa PF01738 DLH 552-685 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793763.1`	Pfam	`PF00326`	Peptidase_S9	Domain	503	702	8.2e-48	163.4	Prolyl oligopeptidase family
`XP_057793763.1`	Pfam	`PF20434`	BD-FAE	Domain	542	661	9.9e-10	39.0	BD-FAE
`XP_057793763.1`	Pfam	`PF07859`	Abhydrolase_3	Domain	542	680	1e-06	29.4	alpha/beta hydrolase fold
`XP_057793763.1`	Pfam	`PF01738`	DLH	Domain	553	686	2.9e-07	31.0	Dienelactone hydrolase family
`XP_057793764.1`	Pfam	`PF00326`	Peptidase_S9	Domain	502	701	8.2e-48	163.4	Prolyl oligopeptidase family
`XP_057793764.1`	Pfam	`PF20434`	BD-FAE	Domain	541	660	9.9e-10	39.0	BD-FAE
`XP_057793764.1`	Pfam	`PF07859`	Abhydrolase_3	Domain	541	679	1e-06	29.4	alpha/beta hydrolase fold
`XP_057793764.1`	Pfam	`PF01738`	DLH	Domain	552	685	2.9e-07	31.0	Dienelactone hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937781.1
ATCCAAAATTTAAAACAATCAAAAAATATAGGACGGAGAGCTTATTGAGCAACATATGGCATTTTGCGCAGTCATCACTCTCAGTCGTCACTGCCGCCCTCCCCTACTCCTTCCGCATTTGCATATTTCCAGAGTCCACCACGCCCCCAAACTCCCATTTTACTGCAGAAGGCGAGCTTCGACGATTACAATGTCTTCCGCCTCAGAAACCAAACTCACGGCCCCCTATGGTTCTTGGACATCCCCTATCACCGCAGACG...

XM_057937780.1
GGACGGAGAGCTTATTGAGCAACATATGGCATTTTGCGCAGTCATCACTCTCAGTCGTCACTGCCGCCCTCCCCTACTCCTTCCGCATTTGCATATTTCCAGAGTCCACCACGCCCCCAAACTCCCATTTTACTGCAGAAGGCGAGCTTCGACGATTACAATGTCTTCCGCCTCAGAAACCAAACTCACGGCCCCCTATGGTTCTTGGACATCCCCTATCACCGCAGACGTCGTTTCTGGCTCCGCAGGAGGACTCGGCG...

CDS

2 records

下载 CDS FASTA

LOC131010318
ATGGCATTTTGCGCAGTCATCACTCTCAGTCGTCACTGCCGCCCTCCCCTACTCCTTCCGCATTTGCATATTTCCAGAGTCCACCACGCCCCCAAACTCCCATTTTACTGCAGAAGGCGAGCTTCGACGATTACAATGTCTTCCGCCTCAGAAACCAAACTCACGGCCCCCTATGGTTCTTGGACATCCCCTATCACCGCAGACGTCGTTTCTGGCTCCGCAGGAGGACTCGGCGGCTTTGCGACAGACTCTCTGGGCCG...

Protein

2 records

下载 Protein FASTA

XP_057793763.1
MAFCAVITLSRHCRPPLLLPHLHISRVHHAPKLPFYCRRRASTITMSSASETKLTAPYGSWTSPITADVVSGSAGGLGGFATDSLGRLYWLESRPTESGRNVLVRQADNENDEPIDITPKDFAVRTVAQEYGGGAFSISGDSIIFSNYRDQRLYKQSISSKADSAPVPLTPDYNGPHVCYADGVFDFRLNCYVTVMEDRRESSTCSITTIVSVDLRGNDIKEPKILVEGNDFYAFPRIDHKGERMAWIEWSHPNMPWDKS...

XP_057793764.1
MAFCAVITLSRHCRPPLLLPHLHISRVHHAPKLPFYCRRRASTITMSSASETKLTAPYGSWTSPITADVVSGSAGGLGGFATDSLGRLYWLESRPTESGRNVLVRQADNENDEPIDITPKDFAVRTVAQEYGGGAFSISGDSIIFSNYRDQRLYKQSISSKDSAPVPLTPDYNGPHVCYADGVFDFRLNCYVTVMEDRRESSTCSITTIVSVDLRGNDIKEPKILVEGNDFYAFPRIDHKGERMAWIEWSHPNMPWDKSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器