Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003362`

染色体: Chr02 坐标: 54744015-54752181 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003362`
名称	SmilChr02G003362
描述	CLP protease regulatory subunit CLPX3, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54744015 - 54752181 / `-`

ID 对照

NCBI Gene ID	`LOC131010321`
GeneID	`131010321`
locus_tag	`-`
NCBI Name	`LOC131010321`
原始查询	`LOC131010321`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CLP protease regulatory subunit CLPX3, mitochondrial
产物	CLP protease regulatory subunit CLPX3%2C mitochondrial
Arabidopsis	`AT1G33360` (AT1G33360) ATP-dependent Clp protease [Source:NCBI gene (formerly Entrezgene);Acc:840230] identity=61.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0564400` - identity=63.7; qcov=1.03; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005759 (mitochondrial matrix); GO:0006457 (protein folding); GO:0006508 (proteolysis); GO:0016887 (ATP hydrolysis activity); GO:0030163 (protein catabolic process); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	-
Pfam	PF00004 (AAA); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small)
InterPro	-
eggNOG	-
NR	GeneID:131010321

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057793768.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057793768.1`
3	Nucleus	细胞核	0.00000	`XP_057793768.1`
4	Chromosome	染色体	0.00000	`XP_057793768.1`
5	Centromere	着丝粒	0.00000	`XP_057793768.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54744490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B129,B91
`Chr2:54746385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,D10
`Chr2:54747149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:54747281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr2:54747326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B45,B64,C17,C83
`Chr2:54747340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B53,B71,C45
`Chr2:54750452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:54751062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr2:54751064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr2:54751067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B89,C1,C28,C85
`Chr2:54751111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr2:54751223`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793768.1

680 aa

340

680

AAA_2

AAA_5

AAA

ClpB_D2-small

PF07724 AAA_2 324-528 aa PF07728 AAA_5 327-405 aa PF00004 AAA 328-434 aa PF10431 ClpB_D2-small 535-606 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793768.1`	Pfam	`PF07724`	AAA_2	Domain	324	528	8.1e-31	108.0	AAA domain (Cdc48 subfamily)
`XP_057793768.1`	Pfam	`PF07728`	AAA_5	Domain	327	405	1.5e-05	25.7	AAA domain (dynein-related subfamily)
`XP_057793768.1`	Pfam	`PF00004`	AAA	Domain	328	434	4.2e-15	57.1	ATPase family associated with various cellular activities (AAA)
`XP_057793768.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	535	606	1.9e-11	44.6	C-terminal, D2-small domain, of ClpB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009096530.1
CACATTAAATTAAATTAGGGGATTGTGGAGAAGGAGCAACTAATAAGATGTCCAATTTCAGTGAAAGGGGATCATCCTCAAATTCTGTTTGTCGAAATTCAGATCGGCGACATGAAATTCCATGTATTGGACTTGGAGTGTTGGAGTGGATTTTGTTCTATTCTGGGCTTCAATTCTCCTACAAATGCGCTCCCACTTTGATGTTGTGCCGTGGTTTTCGTTTATTTCCTCGCTCTGTGTTCCCCTATATTCACTTCCTA...

XM_057937785.1
ATAGAAAATAAGATAAAAGAATGAAGAAATTATAAGGGAGAAATTTGTGTTAATCTCCATTTTTTCATACTAATAAATTTATCAATAAAAAAAGACACATTAAATTAAATTAGGGGATTGTGGAGAAGGAGCAACTAATAAGATGTCCAATTTCAGTGAAAGGGGATCATCCTCAAATTCTGTTTGTCGAAATTCAGATCGGCGACATGAAATTCCATGTATTGGACTTGGAGTGTTGGAGTGGATTTTGTTCTATTCTG...

CDS

1 records

下载 CDS FASTA

LOC131010321
ATGTCGGGAGTTTGGAGATGGACGAGACTAAGAGAGGTGGTCGGAAAAGGTTGGTGGAGGTGTGATCATTCTTATTGGCAGGTGCAAAAGCGCGGCTTGGTCAATTGCTTGCACGCTGTGAAGCGGAGGGAATCCTTCATCGGAGTGCAGGCAAGATACAAGTGGGACCAGGGCGGCGGTGGCGACGATGAGCTCCGCCCCTCTACCAGGAGGATTAGGGCGGAGGCTAATTGCCCTCGCTGCTCCAAGCAAATGGATCT...

Protein

1 records

下载 Protein FASTA

XP_057793768.1
MSGVWRWTRLREVVGKGWWRCDHSYWQVQKRGLVNCLHAVKRRESFIGVQARYKWDQGGGGDDELRPSTRRIRAEANCPRCSKQMDLLFTNRPHHLIPPNSDAPDSNSDAPDAGSKSSHSNNKDGGADGNAFQAVNLCPNCKTAYYFRPFKMSPLQGSFIEIGRVRSKNSNSDKKLTDAQDNGKRFRPSFWETLRSYGSEPPENWPPPPPPSGNGIAVHTPPGPPFAPGVNVIRASGSGGNGNRTGANNGDKTTWGGSNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器