当前解析结果
SmilChr02G003343| 统一新 Gene ID | SmilChr02G003343 |
|---|---|
| 名称 | SmilChr02G003343 |
| 描述 | uncharacterized SmilChr02G003343 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54660946 - 54666348 / + |
| NCBI Gene ID | LOC131010327 |
|---|---|
| GeneID | 131010327 |
| locus_tag | - |
| NCBI Name | LOC131010327 |
| 原始查询 | LOC131010327 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eukaryotic translation initiation factor SUI1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:843476]; symbol=AT1G71350; hit=AT1G71350; species=arabidopsis; confidence=high |
| 产物 | eukaryotic translation initiation factor SUI1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:843476]; symbol=AT1G71350; hit=AT1G71350; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G71350 (AT1G71350)eukaryotic translation initiation factor SUI1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:843476] identity=64; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0557600- identity=65; qcov=1; evalue=0; confidence=high |
| GO | GO:0001731 (formation of translation preinitiation complex); GO:0003743 (translation initiation factor activity); GO:0006413 (translational initiation) |
| KEGG | - |
| Pfam | PF01253 (SUI1); PF17832 (Pre-PUA); PF25304 (WHD_eIF2D); PF26291 (SWIB_eIF2D); PF26292 (PUA_elF2D) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010327 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057793781.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057793781.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057793781.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793781.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793781.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54661246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:54661299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:54661819 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B21,B26,B30,B78 |
Chr2:54661819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B21,B26,B30,B78 |
Chr2:54661848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,B71,D6 |
Chr2:54661879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B140 |
Chr2:54661883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C47 |
Chr2:54662204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B40 |
Chr2:54662285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,C49,C55 |
Chr2:54662302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B26,B46,B64,D10,D11 |
Chr2:54662416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,B65,B91,C71 |
Chr2:54662429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793781.1PF17832
Pre-PUA 2-90 aa
PF26292
PUA_elF2D 101-175 aa
PF25304
WHD_eIF2D 292-374 aa
PF26291
SWIB_eIF2D 416-476 aa
PF01253
SUI1 522-598 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793781.1 |
Pfam | PF17832 |
Pre-PUA | Domain | 2 | 90 | 5.2e-20 | 72.5 | Pre-PUA-like domain |
XP_057793781.1 |
Pfam | PF26292 |
PUA_elF2D | Domain | 101 | 175 | 1e-22 | 80.4 | elF2D, PUA domain |
XP_057793781.1 |
Pfam | PF25304 |
WHD_eIF2D | Domain | 292 | 374 | 1.9e-28 | 99.2 | eIF2D winged helix domain |
XP_057793781.1 |
Pfam | PF26291 |
SWIB_eIF2D | Domain | 416 | 476 | 1.6e-12 | 47.7 | eIF2D, SWIB domain |
XP_057793781.1 |
Pfam | PF01253 |
SUI1 | Domain | 522 | 598 | 7e-22 | 78.4 | Translation initiation factor SUI1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。