当前解析结果
SmilChr02G003331| 统一新 Gene ID | SmilChr02G003331 |
|---|---|
| 名称 | SmilChr02G003331 |
| 描述 | MDIS1-interacting receptor like kinase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54556216 - 54557861 / - |
| NCBI Gene ID | LOC131010338 |
|---|---|
| GeneID | 131010338 |
| locus_tag | - |
| NCBI Name | LOC131010338 |
| 原始查询 | LOC131010338 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MDIS1-interacting receptor like kinase 2-like |
| 产物 | MDIS1-interacting receptor like kinase 2-like |
| Arabidopsis | AT1G33590 (AT1G33590)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:840253] identity=63.7; qcov=0.956; evalue=0; confidence=high |
| Rice | Os03g0335500- identity=32.4; qcov=0.947; evalue=1.28e-49; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010338 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.60000 | XP_057793797.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057793797.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793797.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793797.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793797.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54556309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:54556315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C2,C32,C68,D11 |
Chr2:54556343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr2:54556399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C39 |
Chr2:54556431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,B115,C45 |
Chr2:54556566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:54556711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B115,C45 |
Chr2:54556732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:54556752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:54556875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B89,C1,C85 |
Chr2:54556910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:54557055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B115,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793797.1PF08263
LRRNT_2 27-64 aa
PF00560
LRR_1 151-172 aa
PF13855
LRR_8 154-209 aa
PF00560
LRR_1 198-220 aa
PF00560
LRR_1 222-242 aa
PF13855
LRR_8 246-306 aa
PF00560
LRR_1 247-269 aa
PF00560
LRR_1 272-293 aa
PF00560
LRR_1 318-337 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793797.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 27 | 64 | 6.2e-13 | 49.5 | Leucine rich repeat N-terminal domain |
XP_057793797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 151 | 172 | 2.6e-31 | 101.6 | Leucine Rich Repeat |
XP_057793797.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 154 | 209 | 4.4e-27 | 94.3 | Leucine rich repeat |
XP_057793797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 198 | 220 | 2.6e-31 | 101.6 | Leucine Rich Repeat |
XP_057793797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 222 | 242 | 2.6e-31 | 101.6 | Leucine Rich Repeat |
XP_057793797.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 246 | 306 | 4.4e-27 | 94.3 | Leucine rich repeat |
XP_057793797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 247 | 269 | 2.6e-31 | 101.6 | Leucine Rich Repeat |
XP_057793797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 272 | 293 | 2.6e-31 | 101.6 | Leucine Rich Repeat |
XP_057793797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 318 | 337 | 2.6e-31 | 101.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。