Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003740`

染色体: Chr01 坐标: 55715353-55717053 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003740`
名称	SmilChr01G003740
描述	uncharacterized SmilChr01G003740
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55715353 - 55717053 / `-`

ID 对照

NCBI Gene ID	`LOC131010346`
GeneID	`131010346`
locus_tag	`-`
NCBI Name	`LOC131010346`
原始查询	`LOC131010346`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	GPI-anchored adhesin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819004]; symbol=AT2G43990; hit=AT2G43990; species=arabidopsis; confidence=weak
产物	GPI-anchored adhesin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819004]; symbol=AT2G43990; hit=AT2G43990; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G43990` (AT2G43990) GPI-anchored adhesin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819004] identity=42.4; qcov=0.221; evalue=2.66e-14; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131010346

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793821.1`
2	Chromosome	染色体	0.00000	`XP_057793821.1`
3	Centromere	着丝粒	0.00000	`XP_057793821.1`
4	Chromatin	染色质	0.00000	`XP_057793821.1`
5	Telomere	端粒	0.00000	`XP_057793821.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55715426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:55715512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B35,B78,B93,B94,C31
`Chr1:55715526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:55715528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:55715673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr1:55715700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:55715818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C38,C75
`Chr1:55716097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,D11
`Chr1:55716130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C78
`Chr1:55716190`	`A`	`AT`	1bp_insertion	frameshift_variant	55	A15,A16,A21,A3,A5,A9,B1,B104,B119,B13,B130,B132,B137,B14,B18,B19,B2,B27,B29,B30,B34,B37,B4,B40,B42,B43,B49,B57,B61,B64,B68,B7,B72,B73,B80,B82,C17,C18,C19,C22,C25,C26,C29,C30,C41,C42,C45,C5,C51,C67,C70,C81,C85,C87,D4
`Chr1:55716242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:55716359`	`A`	`AG`	1bp_insertion	frameshift_variant	2	B106,B11

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937838.1
ATGGAGAGAGATTGCAAAAGGAAGAAGACGAAGAAGAAGAGAGAAAGTTTCGAGGAGAGAAGCCCACTGCAACATCTCAATGGGCTTCCAATTCACAGACGCAATACGAAAAGGAGCTCCCACATTTCTTCTTCTTCTTCTGCGCCTGCTGCTTCAAGATCATTACTCTCTGATAATAATACCTCTTCTTCGAGAACCCATATTCACAAAAATAGACCGAATCGTTTTCCAAAAATAGCAAAACACGAGTCCAATGTTCA...

CDS

1 records

下载 CDS FASTA

LOC131010346
ATGGAGAGAGATTGCAAAAGGAAGAAGACGAAGAAGAAGAGAGAAAGTTTCGAGGAGAGAAGCCCACTGCAACATCTCAATGGGCTTCCAATTCACAGACGCAATACGAAAAGGAGCTCCCACATTTCTTCTTCTTCTTCTGCGCCTGCTGCTTCAAGATCATTACTCTCTGATAATAATACCTCTTCTTCGAGAACCCATATTCACAAAAATAGACCGAATCGTTTTCCAAAAATAGCAAAACACGAGTCCAATGTTCA...

Protein

1 records

下载 Protein FASTA

XP_057793821.1
MERDCKRKKTKKKRESFEERSPLQHLNGLPIHRRNTKRSSHISSSSSAPAASRSLLSDNNTSSSRTHIHKNRPNRFPKIAKHESNVHTSNETPRKPFLQTKPTCKNRQRSKLSFVEDKSEKGSGEFQKNMNNSDGNLSGKCTFNGSSSNCAEICTPYSINFCDHESAIDESVCAANDVKTPPVEASLSPEIQPQSQSRMLVLESVGTPVCYGAGHLVSGVSDRRKSKRRGSLKGIPFSDAKRDDNDNVSVDLQESWIPLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器