Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003406`

染色体: Chr02 坐标: 55233396-55240707 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003406`
名称	SmilChr02G003406
描述	uncharacterized SmilChr02G003406
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55233396 - 55240707 / `+`

ID 对照

NCBI Gene ID	`LOC131010349`
GeneID	`131010349`
locus_tag	`-`
NCBI Name	`LOC131010349`
原始查询	`LOC131010349`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tetrapyrrole (Corrin/Porphyrin) Methylase [Source:NCBI gene (formerly Entrezgene);Acc:841078]; symbol=AT1G45110; hit=AT1G45110; species=arabidopsis; confidence=high
产物	Tetrapyrrole (Corrin/Porphyrin) Methylase [Source:NCBI gene (formerly Entrezgene);Acc:841078]; symbol=AT1G45110; hit=AT1G45110; species=arabidopsis; confidence=high
Arabidopsis	`AT1G45110` (AT1G45110) Tetrapyrrole (Corrin/Porphyrin) Methylase [Source:NCBI gene (formerly Entrezgene);Acc:841078] identity=71.2; qcov=0.781; evalue=2.88e-116; confidence=high
Rice	`Os10g0414500` - identity=69.7; qcov=0.699; evalue=7.52e-99; confidence=high
GO	GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF00590 (TP_methylase)
InterPro	-
eggNOG	-
NR	GeneID:131010349

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793818.1`
2	Mitochondrion	线粒体	0.20000	`XP_057793818.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057793819.1`
4	Nucleus	细胞核	0.00000	`XP_057793819.1`
5	Chromosome	染色体	0.00000	`XP_057793819.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55233795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B64
`Chr2:55233928`	`GAT`	`G`	2bp_deletion	frameshift_variant	1	B17
`Chr2:55233928`	`GAT`	`G`	2bp_deletion	CDS_variant	1	B17
`Chr2:55235469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr2:55235834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:55237236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:55238999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr2:55239265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,C70
`Chr2:55239294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B64,C49,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793818.1

359 aa

180

359

TP_methylase

PF00590 TP_methylase 79-278 aa

XP_057793819.1

347 aa

174

347

TP_methylase

PF00590 TP_methylase 79-278 aa

XP_057793822.1

302 aa

151

302

TP_methylase

PF00590 TP_methylase 79-273 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793818.1`	Pfam	`PF00590`	TP_methylase	Domain	79	278	3.9e-33	115.9	Tetrapyrrole (Corrin/Porphyrin) Methylases
`XP_057793819.1`	Pfam	`PF00590`	TP_methylase	Domain	79	278	3.6e-33	116.0	Tetrapyrrole (Corrin/Porphyrin) Methylases
`XP_057793822.1`	Pfam	`PF00590`	TP_methylase	Domain	79	273	1.8e-30	107.2	Tetrapyrrole (Corrin/Porphyrin) Methylases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937839.1
ATTTGCTGCAACACAAAAGTTACATTAACAAGTCCCAGTAGTGAGTATGCAGAGCAGTTGATGCATAACCACGATTATCACAATTAATACAATCATTTACTACTATCATTTGATTTTTCTTTATTGGATCGTTTTCTTATTTTCCTTTAATTTGTGTATCCCGCCGGCACAGCCCTTTTTTATACACAGAACCTACGTTCATCACCCCTTTCCCTTCTATTTCAAATATTAATTTTCTTAACCTTCATTTCTATCTCTTA...

XM_057937836.1
TTTGCTGCAACACAAAAGTTACATTAACAAGTCCCAGTAGTGAGTATGCAGAGCAGTTGATGCATAACCACGATTATCACAATTAATACAATCATTTACTACTATCATTTGATTTTTCTTTATTGGATCGTTTTCTTATTTTCCTTTAATTTGTGTATCCCGCCGGCACAGCCCTTTTTTATACACAGAACCTACGTTCATCACCCCTTTCCCTTCTATTTCAAATATTAATTTTCTTAACCTTCATTTCTATCTCTTAA...

CDS

3 records

下载 CDS FASTA

LOC131010349
ATGATGCTGCTTCGCCTTTGCCATTCAATGGCAGTACCTTTCCCCATACATCTACGGCGAGCGGCGTCGCCGTGGCTCTGCCGCTCTCCTTCATATCATTTCCTATTCTCCGTCTCTGCACATCGTCAGACCACCATTTCCGCCCTTCCCTTCTCATCCTGCAATCATCAACTATCTTCTTCCTCCGACCTCGCGGATGATATCCCCTCTAAACAAGGTCCTTTAAAGCCAGGATTGTATCTTGTTGGCACGCCGATCGG...

Protein

3 records

下载 Protein FASTA

XP_057793818.1
MMLLRLCHSMAVPFPIHLRRAASPWLCRSPSYHFLFSVSAHRQTTISALPFSSCNHQLSSSSDLADDIPSKQGPLKPGLYLVGTPIGNLEDITIRALRVLKSADVILSEDTRHSGKLLMYYSIRTPLLSYHKFNESQREQVVLKRLLGGEIVALISDAGMPGISDPGMELAKLCIDKNIPVIPVPGPSAVVAALSASGLPTNEFTFVGFLPKHATTRRERLMVSANSATTQVFFVPPHKLSQFLEESSSIFGNSRRCVIA...

XP_057793819.1
MMLLRLCHSMAVPFPIHLRRAASPWLCRSPSYHFLFSVSAHRQTTISALPFSSCNHQLSSSSDLADDIPSKQGPLKPGLYLVGTPIGNLEDITIRALRVLKSADVILSEDTRHSGKLLMYYSIRTPLLSYHKFNESQREQVVLKRLLGGEIVALISDAGMPGISDPGMELAKLCIDKNIPVIPVPGPSAVVAALSASGLPTNEFTFVGFLPKHATTRRERLMVSANSATTQVFFVPPHKLSQFLEESSSIFGNSRRCVIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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