当前解析结果
SmilChr02G003407| 统一新 Gene ID | SmilChr02G003407 |
|---|---|
| 名称 | SmilChr02G003407 |
| 描述 | leucine-rich repeat extensin-like protein 3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55242063 - 55244988 / + |
| NCBI Gene ID | LOC131010351 |
|---|---|
| GeneID | 131010351 |
| locus_tag | - |
| NCBI Name | LOC131010351 |
| 原始查询 | LOC131010351 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat extensin-like protein 3 |
| 产物 | leucine-rich repeat extensin-like protein 3 |
| Arabidopsis | -- |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010351 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057793824.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057793824.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793824.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793824.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793824.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55243952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,C86,D7 |
Chr2:55244022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:55244100 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | D4 |
Chr2:55244100 |
C |
CA |
1bp_insertion | CDS_variant | 1 | D4 |
Chr2:55244149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr2:55244164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr2:55244199 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr2:55244199 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C24 |
Chr2:55244228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B23,B35,B50 |
Chr2:55244275 |
GC |
G |
1bp_deletion | frameshift_variant | 36 | A16,A18,A2,A5,B100,B119,B122,B123,B126,B2,B23,B35,B37,B48,B50,B71,B98,C13,C15,C16,C22,C28,C32,C46,C54,C60,C64,C65,C66,C69,C7,C74,C77,C79,C82,D1 |
Chr2:55244285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:55244331 |
G |
GCA |
2bp_insertion | frameshift_variant | 54 | A16,A2,A25,A4,A5,B114,B117,B119,B12,B122,B125,B126,B13,B139,B140,B2,B23,B24,B27,B29,B35,B37,B40,B48,B50,B65,B69,B71,B79,B87,B91,B95,B98,C1,C15,C16,C2,C20,C22,C23,C28,C32,C45,C52,C54,C60,C65,C67,C69,C74,C77,C79,D3,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。